Analysis of interatomic Contacts of Structural Units in PDB entry:
6DET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DET entry

There is 1 chain in PDB entry 6DET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 10PHE 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6DET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 22Right-handed alpha
Helix 2
AA2
A
46 60Right-handed alpha
Helix 3
AA3
A
69 71Right-handed 310
Helix 4
AA4
A
72 79Right-handed alpha
Helix 5
AA5
A
93 98Right-handed 310
Helix 6
AA6
A
117 119Right-handed 310
Helix 7
AA7
A
122 127Right-handed 310
Helix 8
AA8
A
138 145Right-handed alpha
Helix 9
AA9
A
160 171Right-handed alpha
Helix 10
AB1
A
180 184Right-handed alpha
Helix 11
AB2
A
185 190Right-handed alpha
Helix 12
AB3
A
213 230Right-handed alpha
Helix 13
AB4
A
231 242Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6DET. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
23 28parallel
Strand 3
A
84 90parallel
Strand 4
A
201 209anti-parallel
Strand 5
A
106 115anti-parallel
Strand 6
A
175 179anti-parallel
Strand 7
A
129 134parallel
Strand 8
A
153 158parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
201 209anti-parallel
Strand 3
A
106 115anti-parallel
Strand 4
A
193 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
44 45anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il