Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEU entry

There are 2 chains in PDB entry 6DEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30SER 292
B
 ASP 32SER 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6DEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 82Right-handed alpha
Helix 2
AA2
A
92 106Right-handed alpha
Helix 3
AA3
A
125 143Right-handed alpha
Helix 4
AA4
A
148 152Right-handed 310
Helix 5
AA5
A
226 240Right-handed alpha
Helix 6
AA6
A
244 259Right-handed alpha
Helix 7
AA7
B
60 65Right-handed alpha
Helix 8
AA8
B
65 82Right-handed alpha
Helix 9
AA9
B
92 106Right-handed alpha
Helix 10
AB1
B
125 143Right-handed alpha
Helix 11
AB2
B
148 152Right-handed 310
Helix 12
AB3
B
226 240Right-handed alpha
Helix 13
AB4
B
244 259Right-handed alpha
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There are 2 sheets in PDB entry 6DEU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
46 51parallel
Strand 3
A
114 119parallel
Strand 4
A
156 160parallel
Strand 5
A
206 210parallel
Strand 6
A
277 280anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 89first strand
Strand 2
B
43 52parallel
Strand 3
B
111 120parallel
Strand 4
B
156 160parallel
Strand 5
B
206 210parallel
Strand 6
B
277 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il