Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEV entry

There are 4 chains in PDB entry 6DEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30ASN 293
B
 MET 30SER 292
C
 MET 30SER 292
D
 GLU 29ASN 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6DEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 81Right-handed alpha
Helix 2
AA2
A
92 106Right-handed alpha
Helix 3
AA3
A
125 143Right-handed alpha
Helix 4
AA4
A
148 152Right-handed 310
Helix 5
AA5
A
226 240Right-handed alpha
Helix 6
AA6
A
244 259Right-handed alpha
Helix 7
AA7
B
60 81Right-handed alpha
Helix 8
AA8
B
92 106Right-handed alpha
Helix 9
AA9
B
125 143Right-handed alpha
Helix 10
AB1
B
148 152Right-handed 310
Helix 11
AB2
B
226 240Right-handed alpha
Helix 12
AB3
B
244 259Right-handed alpha
Helix 13
AB4
B
266 270Right-handed 310
Helix 14
AB5
C
60 81Right-handed alpha
Helix 15
AB6
C
92 106Right-handed alpha
Helix 16
AB7
C
125 143Right-handed alpha
Helix 17
AB8
C
148 152Right-handed 310
Helix 18
AB9
C
226 240Right-handed alpha
Helix 19
AC1
C
244 263Right-handed alpha
Helix 20
AC2
C
266 270Right-handed 310
Helix 21
AC3
D
60 81Right-handed alpha
Helix 22
AC4
D
92 106Right-handed alpha
Helix 23
AC5
D
125 143Right-handed alpha
Helix 24
AC6
D
148 152Right-handed 310
Helix 25
AC7
D
226 240Right-handed alpha
Helix 26
AC8
D
244 258Right-handed alpha
Helix 27
AC9
D
259 259Right-handed 310
Helix 28
AD1
D
266 270Right-handed 310
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There are 2 sheets in PDB entry 6DEV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
46 51parallel
Strand 3
A
114 119parallel
Strand 4
A
156 160parallel
Strand 5
A
206 210parallel
Strand 6
A
277 280anti-parallel
Strand 7
B
277 280anti-parallel
Strand 8
B
206 210anti-parallel
Strand 9
B
156 160parallel
Strand 10
B
114 119parallel
Strand 11
B
46 51parallel
Strand 12
B
84 89parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 89first strand
Strand 2
C
46 51parallel
Strand 3
C
114 119parallel
Strand 4
C
156 160parallel
Strand 5
C
206 210parallel
Strand 6
C
277 280anti-parallel
Strand 7
D
277 280anti-parallel
Strand 8
D
206 210anti-parallel
Strand 9
D
156 160parallel
Strand 10
D
114 119parallel
Strand 11
D
46 51parallel
Strand 12
D
84 89parallel
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