Analysis of interatomic Contacts of Structural Units in PDB entry:
6DEY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DEY entry

There are 4 chains in PDB entry 6DEY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 142
B
 THR 152LYS 295
C
 THR 2THR 138
D
 THR 152LYS 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6DEY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
30 45Right-handed alpha
Helix 3
AA3
A
87 99Right-handed alpha
Helix 4
AA4
A
106 116Right-handed alpha
Helix 5
AA5
A
125 140Right-handed alpha
Helix 6
AA6
B
205 213Right-handed alpha
Helix 7
AA7
B
213 224Right-handed alpha
Helix 8
AA8
B
227 246Right-handed alpha
Helix 9
AA9
B
249 253Right-handed 310
Helix 10
AB1
C
13 26Right-handed alpha
Helix 11
AB2
C
30 45Right-handed alpha
Helix 12
AB3
C
87 99Right-handed alpha
Helix 13
AB4
C
106 116Right-handed alpha
Helix 14
AB5
C
125 138Right-handed alpha
Helix 15
AB6
D
205 213Right-handed alpha
Helix 16
AB7
D
213 224Right-handed alpha
Helix 17
AB8
D
227 246Right-handed alpha
Helix 18
AB9
D
249 253Right-handed 310
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There are 4 sheets in PDB entry 6DEY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
76 83parallel
Strand 3
A
64 70anti-parallel
Strand 4
B
164 170anti-parallel
Strand 5
B
153 158anti-parallel
Strand 6
A
6 10anti-parallel
Strand 7
B
277 281anti-parallel
Strand 8
B
284 288anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
198 204anti-parallel
Strand 3
B
255 261anti-parallel
Strand 4
B
266 270anti-parallel
Strand 5
B
291 292parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 105first strand
Strand 2
C
76 82parallel
Strand 3
C
65 70anti-parallel
Strand 4
D
164 170anti-parallel
Strand 5
D
153 158anti-parallel
Strand 6
C
6 10anti-parallel
Strand 7
D
277 281anti-parallel
Strand 8
D
284 288anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
191 194first strand
Strand 2
D
198 204anti-parallel
Strand 3
D
255 261anti-parallel
Strand 4
D
266 270anti-parallel
Strand 5
D
291 292parallel
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