Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DFD entry

There are 2 chains in PDB entry 6DFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 488ALA 655
B
 LEU 496ALA 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6DFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
493 508Right-handed alpha
Helix 2
AA2
A
509 512Right-handed 310
Helix 3
AA3
A
517 526Right-handed alpha
Helix 4
AA4
A
527 529Right-handed 310
Helix 5
AA5
A
543 545Right-handed 310
Helix 6
AA6
A
586 591Right-handed 310
Helix 7
AA7
A
643 655Right-handed alpha
Helix 8
AA8
B
497 508Right-handed alpha
Helix 9
AA9
B
509 512Right-handed 310
Helix 10
AB1
B
517 527Right-handed alpha
Helix 11
AB2
B
543 545Right-handed 310
Helix 12
AB3
B
586 591Right-handed 310
Helix 13
AB4
B
643 651Right-handed alpha
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There are 4 sheets in PDB entry 6DFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 534first strand
Strand 2
A
636 642anti-parallel
Strand 3
A
557 563anti-parallel
Strand 4
A
584 585anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 549first strand
Strand 2
A
628 632anti-parallel
Strand 3
A
566 570anti-parallel
Strand 4
A
575 579anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 534first strand
Strand 2
B
636 642anti-parallel
Strand 3
B
557 563anti-parallel
Strand 4
B
584 585anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
547 549first strand
Strand 2
B
628 632anti-parallel
Strand 3
B
566 570anti-parallel
Strand 4
B
575 579anti-parallel
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