Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DFE entry

There are 2 chains in PDB entry 6DFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 322
B
 MET 1VAL 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6DFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
42 47Right-handed alpha
Helix 3
AA3
A
58 63Right-handed alpha
Helix 4
AA4
A
64 66Right-handed 310
Helix 5
AA5
A
68 83Right-handed alpha
Helix 6
AA6
A
96 103Right-handed alpha
Helix 7
AA7
A
104 107Right-handed 310
Helix 8
AA8
A
121 128Right-handed 310
Helix 9
AA9
A
139 153Right-handed alpha
Helix 10
AB1
A
165 171Right-handed alpha
Helix 11
AB2
A
189 193Right-handed 310
Helix 12
AB3
A
195 206Right-handed alpha
Helix 13
AB4
A
219 231Right-handed alpha
Helix 14
AB5
A
243 253Right-handed alpha
Helix 15
AB6
A
262 271Right-handed alpha
Helix 16
AB7
A
283 288Right-handed alpha
Helix 17
AB8
A
300 307Right-handed 310
Helix 18
AB9
A
308 321Right-handed alpha
Helix 19
AC1
B
10 28Right-handed alpha
Helix 20
AC2
B
42 47Right-handed alpha
Helix 21
AC3
B
58 63Right-handed alpha
Helix 22
AC4
B
64 66Right-handed 310
Helix 23
AC5
B
68 83Right-handed alpha
Helix 24
AC6
B
96 103Right-handed alpha
Helix 25
AC7
B
104 107Right-handed 310
Helix 26
AC8
B
121 128Right-handed 310
Helix 27
AC9
B
139 153Right-handed alpha
Helix 28
AD1
B
165 171Right-handed alpha
Helix 29
AD2
B
189 193Right-handed 310
Helix 30
AD3
B
195 206Right-handed alpha
Helix 31
AD4
B
219 231Right-handed alpha
Helix 32
AD5
B
243 253Right-handed alpha
Helix 33
AD6
B
262 271Right-handed alpha
Helix 34
AD7
B
283 288Right-handed alpha
Helix 35
AD8
B
300 307Right-handed 310
Helix 36
AD9
B
308 323Right-handed alpha
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There are 4 sheets in PDB entry 6DFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
32 38parallel
Strand 3
A
2 6parallel
Strand 4
A
89 92parallel
Strand 5
A
111 114parallel
Strand 6
A
130 132parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
212 215parallel
Strand 3
A
180 184parallel
Strand 4
A
256 260parallel
Strand 5
A
275 279parallel
Strand 6
A
294 298parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 57first strand
Strand 2
B
32 38parallel
Strand 3
B
2 6parallel
Strand 4
B
89 92parallel
Strand 5
B
111 114parallel
Strand 6
B
130 132parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
212 215parallel
Strand 3
B
180 184parallel
Strand 4
B
256 260parallel
Strand 5
B
275 279parallel
Strand 6
B
294 298parallel
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