Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DFF entry

There are 8 chains in PDB entry 6DFF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	LYS 158	PRO 167
T	THR 4	GLY 16
B	GLU 14	GLU 583
C	GLU 17	LYS 181
G	PRO 4	GLU 588
H	GLU 17	ASN 179
M	SER 2	GLN 423
S	MET 1	GLN 142

There are102 helices in PDB entry 6DFF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	15	23	Right-handed alpha
Helix 2	AA2	B	26	43	Right-handed alpha
Helix 3	AA3	B	47	49	Right-handed 310
Helix 4	AA4	B	50	55	Right-handed alpha
Helix 5	AA5	B	56	59	Right-handed 310
Helix 6	AA6	B	62	76	Right-handed alpha
Helix 7	AA7	B	82	86	Right-handed 310
Helix 8	AA8	B	87	95	Right-handed alpha
Helix 9	AA9	B	99	111	Right-handed alpha
Helix 10	AB1	B	122	131	Right-handed alpha
Helix 11	AB2	B	134	152	Right-handed alpha
Helix 12	AB3	B	152	160	Right-handed alpha
Helix 13	AB4	B	161	166	Right-handed alpha
Helix 14	AB5	B	173	191	Right-handed alpha
Helix 15	AB6	B	200	212	Right-handed alpha
Helix 16	AB7	B	217	225	Right-handed alpha
Helix 17	AB8	B	233	245	Right-handed alpha
Helix 18	AB9	B	246	250	Right-handed 310
Helix 19	AC1	B	252	267	Right-handed alpha
Helix 20	AC2	B	276	283	Right-handed alpha
Helix 21	AC3	B	284	291	Right-handed alpha
Helix 22	AC4	B	292	294	Right-handed 310
Helix 23	AC5	B	295	311	Right-handed alpha
Helix 24	AC6	B	321	325	Right-handed 310
Helix 25	AC7	B	331	345	Right-handed alpha
Helix 26	AC8	B	347	349	Right-handed 310
Helix 27	AC9	B	350	359	Right-handed alpha
Helix 28	AD1	B	366	384	Right-handed alpha
Helix 29	AD2	B	387	400	Right-handed alpha
Helix 30	AD3	B	403	419	Right-handed alpha
Helix 31	AD4	B	428	433	Right-handed alpha
Helix 32	AD5	B	441	455	Right-handed alpha
Helix 33	AD6	B	461	466	Right-handed alpha
Helix 34	AD7	B	467	471	Right-handed 310
Helix 35	AD8	B	472	476	Right-handed 310
Helix 36	AD9	B	478	495	Right-handed alpha
Helix 37	AE1	B	499	512	Right-handed alpha
Helix 38	AE2	B	516	533	Right-handed alpha
Helix 39	AE3	B	533	541	Right-handed alpha
Helix 40	AE4	B	556	564	Right-handed alpha
Helix 41	AE5	B	569	575	Right-handed alpha
Helix 42	AE6	C	29	39	Right-handed alpha
Helix 43	AE7	C	75	79	Right-handed 310
Helix 44	AE8	C	96	111	Right-handed alpha
Helix 45	AE9	C	137	144	Right-handed alpha
Helix 46	AF1	C	165	178	Right-handed alpha
Helix 47	AF2	G	6	16	Right-handed alpha
Helix 48	AF3	G	19	39	Right-handed alpha
Helix 49	AF4	G	45	60	Right-handed alpha
Helix 50	AF5	G	63	66	Right-handed 310
Helix 51	AF6	G	67	75	Right-handed alpha
Helix 52	AF7	G	78	93	Right-handed alpha
Helix 53	AF8	G	94	98	Right-handed 310
Helix 54	AF9	G	99	101	Right-handed 310
Helix 55	AG1	G	102	111	Right-handed alpha
Helix 56	AG2	G	115	130	Right-handed alpha
Helix 57	AG3	G	138	143	Right-handed alpha
Helix 58	AG4	G	150	168	Right-handed alpha
Helix 59	AG5	G	169	175	Right-handed 310
Helix 60	AG6	G	187	205	Right-handed alpha
Helix 61	AG7	G	208	213	Right-handed alpha
Helix 62	AG8	G	215	229	Right-handed alpha
Helix 63	AG9	G	242	256	Right-handed alpha
Helix 64	AH1	G	261	267	Right-handed alpha
Helix 65	AH2	G	267	275	Right-handed alpha
Helix 66	AH3	G	282	299	Right-handed alpha
Helix 67	AH4	G	302	318	Right-handed alpha
Helix 68	AH5	G	321	335	Right-handed alpha
Helix 69	AH6	G	339	344	Right-handed alpha
Helix 70	AH7	G	346	355	Right-handed alpha
Helix 71	AH8	G	358	373	Right-handed alpha
Helix 72	AH9	G	377	391	Right-handed alpha
Helix 73	AI1	G	396	411	Right-handed alpha
Helix 74	AI2	G	415	429	Right-handed alpha
Helix 75	AI3	G	436	448	Right-handed alpha
Helix 76	AI4	G	452	464	Right-handed alpha
Helix 77	AI5	G	469	488	Right-handed alpha
Helix 78	AI6	G	503	515	Right-handed alpha
Helix 79	AI7	G	521	533	Right-handed alpha
Helix 80	AI8	G	543	550	Right-handed alpha
Helix 81	AI9	G	556	573	Right-handed alpha
Helix 82	AJ1	G	577	581	Right-handed 310
Helix 83	AJ2	H	29	38	Right-handed alpha
Helix 84	AJ3	H	74	82	Right-handed 310
Helix 85	AJ4	H	99	111	Right-handed alpha
Helix 86	AJ5	H	135	144	Right-handed alpha
Helix 87	AJ6	H	145	148	Right-handed 310
Helix 88	AJ7	H	165	176	Right-handed alpha
Helix 89	AJ8	M	28	31	Right-handed 310
Helix 90	AJ9	M	32	42	Right-handed alpha
Helix 91	AK1	M	76	95	Right-handed alpha
Helix 92	AK2	M	99	104	Right-handed alpha
Helix 93	AK3	M	106	117	Right-handed alpha
Helix 94	AK4	M	127	132	Right-handed alpha
Helix 95	AK5	M	150	154	Right-handed 310
Helix 96	AK6	M	216	224	Right-handed alpha
Helix 97	AK7	M	243	251	Right-handed alpha
Helix 98	AK8	S	24	41	Right-handed alpha
Helix 99	AK9	S	77	96	Right-handed alpha
Helix 100	AL1	S	99	106	Right-handed alpha
Helix 101	AL2	S	106	116	Right-handed alpha
Helix 102	AL3	S	129	141	Right-handed alpha

There are 13 sheets in PDB entry 6DFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	9	10	first strand
Strand 2	M	406	420	anti-parallel
Strand 3	M	376	377	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	235	238	first strand
Strand 2	M	260	270	anti-parallel
Strand 3	M	189	203	anti-parallel
Strand 4	M	170	183	anti-parallel
Strand 5	M	406	420	parallel
Strand 6	M	381	383	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	61	68	anti-parallel
Strand 3	C	18	24	parallel
Strand 4	C	90	91	parallel
Strand 5	C	123	125	parallel
Strand 6	C	155	157	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	58	first strand
Strand 2	H	61	68	anti-parallel
Strand 3	H	18	22	parallel
Strand 4	H	87	88	parallel
Strand 5	H	120	126	parallel
Strand 6	H	92	93	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	58	first strand
Strand 2	H	61	68	anti-parallel
Strand 3	H	18	22	parallel
Strand 4	H	87	88	parallel
Strand 5	H	120	126	parallel
Strand 6	H	153	157	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	15	20	first strand
Strand 2	M	5	9	anti-parallel
Strand 3	M	69	71	anti-parallel
Strand 4	M	55	58	anti-parallel
Strand 5	M	49	52	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	119	first strand
Strand 2	M	122	123	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	253	255	first strand
Strand 2	M	210	213	anti-parallel
Strand 3	M	394	395	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	277	280	first strand
Strand 2	M	290	299	anti-parallel
Strand 3	M	353	361	anti-parallel
Strand 4	M	324	326	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	306	315	first strand
Strand 2	M	340	349	anti-parallel
Strand 3	M	331	335	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	8	first strand
Strand 2	S	14	19	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	49	51	first strand
Strand 2	S	55	58	anti-parallel
Strand 3	S	71	72	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	118	119	first strand
Strand 2	S	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DFF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFF