Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DFH entry

There are 12 chains in PDB entry 6DFH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 33	LYS 502
B	LEU 520	LEU 663
H	GLN 1	VAL 111
L	GLU 3	LEU 106
C	ASN 33	LYS 502
E	LEU 520	LEU 663
G	GLN 1	VAL 111
J	GLU 3	LEU 106
D	ASN 33	LYS 502
F	LEU 520	LEU 663
I	GLN 1	VAL 111
K	GLU 3	LEU 106

There are 51 helices in PDB entry 6DFH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	117	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	195	198	Right-handed 310
Helix 4	AA4	A	334	350	Right-handed alpha
Helix 5	AA5	A	368	373	Right-handed alpha
Helix 6	AA6	A	387	391	Right-handed 310
Helix 7	AA7	A	425	429	Right-handed 310
Helix 8	AA8	A	475	484	Right-handed alpha
Helix 9	AA9	B	532	535	Right-handed 310
Helix 10	AB1	B	536	543	Right-handed alpha
Helix 11	AB2	B	570	596	Right-handed alpha
Helix 12	AB3	B	621	625	Right-handed 310
Helix 13	AB4	B	628	636	Right-handed alpha
Helix 14	AB5	B	638	650	Right-handed alpha
Helix 15	AB6	B	656	661	Right-handed alpha
Helix 16	AB7	H	83	87	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	C	98	117	Right-handed alpha
Helix 19	AC1	C	122	126	Right-handed 310
Helix 20	AC2	C	195	198	Right-handed 310
Helix 21	AC3	C	334	350	Right-handed alpha
Helix 22	AC4	C	368	373	Right-handed alpha
Helix 23	AC5	C	387	391	Right-handed 310
Helix 24	AC6	C	425	429	Right-handed 310
Helix 25	AC7	C	475	484	Right-handed alpha
Helix 26	AC8	E	532	535	Right-handed 310
Helix 27	AC9	E	536	543	Right-handed alpha
Helix 28	AD1	E	570	596	Right-handed alpha
Helix 29	AD2	E	621	625	Right-handed 310
Helix 30	AD3	E	628	636	Right-handed alpha
Helix 31	AD4	E	638	650	Right-handed alpha
Helix 32	AD5	E	656	661	Right-handed alpha
Helix 33	AD6	G	83	87	Right-handed 310
Helix 34	AD7	J	79	83	Right-handed 310
Helix 35	AD8	D	98	117	Right-handed alpha
Helix 36	AD9	D	122	126	Right-handed 310
Helix 37	AE1	D	195	198	Right-handed 310
Helix 38	AE2	D	334	350	Right-handed alpha
Helix 39	AE3	D	368	373	Right-handed alpha
Helix 40	AE4	D	387	391	Right-handed 310
Helix 41	AE5	D	425	429	Right-handed 310
Helix 42	AE6	D	475	484	Right-handed alpha
Helix 43	AE7	F	532	535	Right-handed 310
Helix 44	AE8	F	536	543	Right-handed alpha
Helix 45	AE9	F	570	596	Right-handed alpha
Helix 46	AF1	F	621	625	Right-handed 310
Helix 47	AF2	F	628	636	Right-handed alpha
Helix 48	AF3	F	638	650	Right-handed alpha
Helix 49	AF4	F	656	661	Right-handed alpha
Helix 50	AF5	I	83	87	Right-handed 310
Helix 51	AF6	K	79	83	Right-handed 310

There are 54 sheets in PDB entry 6DFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	243	245	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	486	499	anti-parallel
Strand 5	A	35	47	anti-parallel
Strand 6	B	605	609	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	238	239	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	154	158	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	169	170	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	432	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	451	456	anti-parallel
Strand 3	A	284	287	anti-parallel
Strand 4	A	271	273	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	451	456	anti-parallel
Strand 3	A	465	470	anti-parallel
Strand 4	A	358	361	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	377	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	414	420	anti-parallel
Strand 4	A	329	333	anti-parallel
Strand 5	A	294	298	anti-parallel
Strand 6	A	443	447	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	316	323	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	89	95	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	89	95	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	72	first strand
Strand 2	H	77	82	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	99	first strand
Strand 2	H	100	100	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	103	105	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	34	37	anti-parallel
Strand 3	L	88	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	243	245	anti-parallel
Strand 3	C	223	227	anti-parallel
Strand 4	C	486	499	anti-parallel
Strand 5	C	35	47	anti-parallel
Strand 6	E	605	609	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	238	239	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	154	158	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	169	170	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	432	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	284	287	anti-parallel
Strand 4	C	271	273	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	465	470	anti-parallel
Strand 4	C	358	361	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	377	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	414	420	anti-parallel
Strand 4	C	329	333	anti-parallel
Strand 5	C	294	298	anti-parallel
Strand 6	C	443	447	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	308	first strand
Strand 2	C	316	323	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	21	25	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	89	95	anti-parallel
Strand 5	G	100	103	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	89	95	anti-parallel
Strand 5	G	107	108	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	72	first strand
Strand 2	G	77	82	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	99	first strand
Strand 2	G	100	100	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	103	105	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	24	first strand
Strand 2	J	70	76	anti-parallel
Strand 3	J	62	67	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	48	first strand
Strand 2	J	34	37	anti-parallel
Strand 3	J	88	91	anti-parallel
Strand 4	J	96	98	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	243	245	anti-parallel
Strand 3	D	223	227	anti-parallel
Strand 4	D	486	499	anti-parallel
Strand 5	D	35	47	anti-parallel
Strand 6	F	605	609	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	216	218	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	238	239	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	177	first strand
Strand 2	D	154	158	anti-parallel
Strand 3	D	129	133	anti-parallel
Strand 4	D	190	193	anti-parallel
Strand 5	D	181	183	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	169	170	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	432	435	parallel
Strand 3	D	423	424	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	451	456	anti-parallel
Strand 3	D	284	287	anti-parallel
Strand 4	D	271	273	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	451	456	anti-parallel
Strand 3	D	465	470	anti-parallel
Strand 4	D	358	361	parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	377	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	414	420	anti-parallel
Strand 4	D	329	333	anti-parallel
Strand 5	D	294	298	anti-parallel
Strand 6	D	443	447	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	308	first strand
Strand 2	D	316	323	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	21	25	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	89	95	anti-parallel
Strand 5	I	100	103	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	89	95	anti-parallel
Strand 5	I	107	108	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	72	first strand
Strand 2	I	77	82	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	98	99	first strand
Strand 2	I	100	100	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	12	first strand
Strand 2	K	103	105	parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	24	first strand
Strand 2	K	70	76	anti-parallel
Strand 3	K	62	67	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	48	first strand
Strand 2	K	34	37	anti-parallel
Strand 3	K	88	91	anti-parallel
Strand 4	K	96	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DFH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFH