Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DFL entry

There are 2 chains in PDB entry 6DFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 259
B
 THR 2ASN 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6DFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
17 25Right-handed alpha
Helix 3
AA3
A
75 88Right-handed alpha
Helix 4
AA4
A
123 128Right-handed alpha
Helix 5
AA5
A
136 157Right-handed alpha
Helix 6
AA6
A
165 167Right-handed 310
Helix 7
AA7
A
199 213Right-handed alpha
Helix 8
AA8
A
220 233Right-handed alpha
Helix 9
AA9
A
235 243Right-handed alpha
Helix 10
AB1
A
243 258Right-handed alpha
Helix 11
AB2
B
3 16Right-handed alpha
Helix 12
AB3
B
18 22Right-handed 310
Helix 13
AB4
B
35 50Right-handed alpha
Helix 14
AB5
B
55 60Right-handed alpha
Helix 15
AB6
B
64 73Right-handed alpha
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There are 3 sheets in PDB entry 6DFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
109 115anti-parallel
Strand 4
A
48 53anti-parallel
Strand 5
A
37 41anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
184 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il