Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DFN entry

There are 4 chains in PDB entry 6DFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 306ALA 546
B
 LEU 306ALA 546
C
 LEU 308ALA 546
D
 LEU 306ALA 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6DFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
306 310Right-handed 310
Helix 2
AA2
A
311 323Right-handed alpha
Helix 3
AA3
A
338 363Right-handed alpha
Helix 4
AA4
A
371 395Right-handed alpha
Helix 5
AA5
A
412 416Right-handed alpha
Helix 6
AA6
A
420 438Right-handed alpha
Helix 7
AA7
A
441 456Right-handed alpha
Helix 8
AA8
A
466 494Right-handed alpha
Helix 9
AA9
A
496 528Right-handed alpha
Helix 10
AB1
A
536 546Right-handed alpha
Helix 11
AB2
B
306 310Right-handed 310
Helix 12
AB3
B
311 323Right-handed alpha
Helix 13
AB4
B
338 363Right-handed alpha
Helix 14
AB5
B
371 395Right-handed alpha
Helix 15
AB6
B
412 416Right-handed alpha
Helix 16
AB7
B
420 438Right-handed alpha
Helix 17
AB8
B
441 456Right-handed alpha
Helix 18
AB9
B
470 494Right-handed alpha
Helix 19
AC1
B
496 529Right-handed alpha
Helix 20
AC2
B
537 546Right-handed alpha
Helix 21
AC3
C
311 323Right-handed alpha
Helix 22
AC4
C
338 363Right-handed alpha
Helix 23
AC5
C
371 395Right-handed alpha
Helix 24
AC6
C
412 416Right-handed alpha
Helix 25
AC7
C
420 438Right-handed alpha
Helix 26
AC8
C
441 456Right-handed alpha
Helix 27
AC9
C
466 494Right-handed alpha
Helix 28
AD1
C
496 529Right-handed alpha
Helix 29
AD2
C
536 546Right-handed alpha
Helix 30
AD3
D
306 310Right-handed 310
Helix 31
AD4
D
311 323Right-handed alpha
Helix 32
AD5
D
342 363Right-handed alpha
Helix 33
AD6
D
371 395Right-handed alpha
Helix 34
AD7
D
412 416Right-handed alpha
Helix 35
AD8
D
420 438Right-handed alpha
Helix 36
AD9
D
441 456Right-handed alpha
Helix 37
AE1
D
468 494Right-handed alpha
Helix 38
AE2
D
496 528Right-handed alpha
Helix 39
AE3
D
537 546Right-handed alpha
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There are 4 sheets in PDB entry 6DFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
401 405first strand
Strand 2
C
408 411anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
401 405first strand
Strand 2
D
408 411anti-parallel
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