Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DFS entry

There are 4 chains in PDB entry 6DFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 207
B
 THR 2ASP 242
C
 ASP 1PRO 182
D
 LEU -27VAL 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6DFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 85Right-handed 310
Helix 2
AA2
B
114 118Right-handed 310
Helix 3
AA3
B
129 137Right-handed alpha
Helix 4
AA4
B
195 200Right-handed alpha
Helix 5
AA5
C
48 52Right-handed 310
Helix 6
AA6
C
58 77Right-handed alpha
Helix 7
AA7
D
58 77Right-handed alpha
Helix 8
AA8
D
77 85Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 6DFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
62 67anti-parallel
Strand 5
A
56 59anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
111 115parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
A
44 51anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
111 115parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
105 106anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
177 181anti-parallel
Strand 3
A
137 142anti-parallel
Strand 4
A
124 130anti-parallel
Strand 5
B
126 127anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
173 175anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
75 81anti-parallel
Strand 4
B
64 72anti-parallel
Strand 5
B
56 61anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
107 112parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
34 38anti-parallel
Strand 5
B
44 49anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
107 112parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 148first strand
Strand 2
B
186 193anti-parallel
Strand 3
B
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 148first strand
Strand 2
B
186 193anti-parallel
Strand 3
B
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 159first strand
Strand 2
B
205 212anti-parallel
Strand 3
B
234 238anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
32 37anti-parallel
Strand 3
C
21 28anti-parallel
Strand 4
C
6 9anti-parallel
Strand 5
D
8 18anti-parallel
Strand 6
D
25 33anti-parallel
Strand 7
D
36 42anti-parallel
Strand 8
D
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
32 37anti-parallel
Strand 3
C
21 28anti-parallel
Strand 4
C
13 17anti-parallel
Strand 5
D
8 18anti-parallel
Strand 6
D
25 33anti-parallel
Strand 7
D
36 42anti-parallel
Strand 8
D
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
105 114anti-parallel
Strand 3
C
147 155anti-parallel
Strand 4
C
134 136anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
105 114anti-parallel
Strand 3
C
147 155anti-parallel
Strand 4
C
140 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 130first strand
Strand 2
C
122 125anti-parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
177 179anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 122first strand
Strand 2
D
155 159anti-parallel
Strand 3
D
148 149anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 174first strand
Strand 2
D
185 186anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il