Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DFT entry

There are 12 chains in PDB entry 6DFT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 21	GLY 455
B	SER 8	SER 328
C	GLN 24	ARG 452
D	ARG 9	SER 328
E	GLN 24	ARG 452
F	PRO 7	SER 329
G	LYS 23	SER 453
H	SER 8	SER 329
I	LYS 23	ARG 452
J	SER 8	SER 328
K	LYS 23	LYS 454
L	SER 8	SER 328

There are213 helices in PDB entry 6DFT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	44	Right-handed alpha
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	48	65	Right-handed alpha
Helix 4	AA4	A	99	104	Right-handed 310
Helix 5	AA5	A	105	116	Right-handed alpha
Helix 6	AA6	A	163	174	Right-handed alpha
Helix 7	AA7	A	222	249	Right-handed alpha
Helix 8	AA8	A	264	287	Right-handed alpha
Helix 9	AA9	A	292	305	Right-handed alpha
Helix 10	AB1	A	307	316	Right-handed alpha
Helix 11	AB2	A	323	327	Right-handed 310
Helix 12	AB3	A	328	338	Right-handed alpha
Helix 13	AB4	A	348	361	Right-handed alpha
Helix 14	AB5	A	373	385	Right-handed alpha
Helix 15	AB6	A	409	417	Right-handed alpha
Helix 16	AB7	A	431	443	Right-handed alpha
Helix 17	AB8	A	443	454	Right-handed alpha
Helix 18	AB9	B	15	21	Right-handed 310
Helix 19	AC1	B	23	34	Right-handed alpha
Helix 20	AC2	B	35	38	Right-handed 310
Helix 21	AC3	B	39	59	Right-handed alpha
Helix 22	AC4	B	71	77	Right-handed alpha
Helix 23	AC5	B	78	89	Right-handed alpha
Helix 24	AC6	B	99	108	Right-handed alpha
Helix 25	AC7	B	121	128	Right-handed alpha
Helix 26	AC8	B	140	165	Right-handed alpha
Helix 27	AC9	B	171	187	Right-handed alpha
Helix 28	AD1	B	189	193	Right-handed 310
Helix 29	AD2	B	194	202	Right-handed alpha
Helix 30	AD3	B	214	225	Right-handed alpha
Helix 31	AD4	B	235	246	Right-handed alpha
Helix 32	AD5	B	262	272	Right-handed alpha
Helix 33	AD6	B	284	288	Right-handed 310
Helix 34	AD7	B	294	301	Right-handed alpha
Helix 35	AD8	B	316	326	Right-handed alpha
Helix 36	AD9	C	31	35	Right-handed 310
Helix 37	AE1	C	36	44	Right-handed alpha
Helix 38	AE2	C	49	66	Right-handed alpha
Helix 39	AE3	C	99	104	Right-handed 310
Helix 40	AE4	C	105	116	Right-handed alpha
Helix 41	AE5	C	163	174	Right-handed alpha
Helix 42	AE6	C	222	246	Right-handed alpha
Helix 43	AE7	C	264	287	Right-handed alpha
Helix 44	AE8	C	292	306	Right-handed alpha
Helix 45	AE9	C	307	316	Right-handed alpha
Helix 46	AF1	C	321	327	Right-handed 310
Helix 47	AF2	C	328	336	Right-handed alpha
Helix 48	AF3	C	348	361	Right-handed alpha
Helix 49	AF4	C	373	385	Right-handed alpha
Helix 50	AF5	C	409	417	Right-handed alpha
Helix 51	AF6	C	431	443	Right-handed alpha
Helix 52	AF7	C	443	451	Right-handed alpha
Helix 53	AF8	D	15	21	Right-handed 310
Helix 54	AF9	D	23	35	Right-handed alpha
Helix 55	AG1	D	36	38	Right-handed 310
Helix 56	AG2	D	39	41	Right-handed 310
Helix 57	AG3	D	42	59	Right-handed alpha
Helix 58	AG4	D	72	75	Right-handed 310
Helix 59	AG5	D	78	89	Right-handed alpha
Helix 60	AG6	D	98	108	Right-handed alpha
Helix 61	AG7	D	121	128	Right-handed alpha
Helix 62	AG8	D	140	163	Right-handed alpha
Helix 63	AG9	D	171	187	Right-handed alpha
Helix 64	AH1	D	189	193	Right-handed 310
Helix 65	AH2	D	194	202	Right-handed alpha
Helix 66	AH3	D	214	225	Right-handed alpha
Helix 67	AH4	D	234	245	Right-handed alpha
Helix 68	AH5	D	262	272	Right-handed alpha
Helix 69	AH6	D	284	288	Right-handed 310
Helix 70	AH7	D	294	301	Right-handed alpha
Helix 71	AH8	D	316	326	Right-handed alpha
Helix 72	AH9	E	31	35	Right-handed 310
Helix 73	AI1	E	36	44	Right-handed alpha
Helix 74	AI2	E	45	47	Right-handed 310
Helix 75	AI3	E	48	66	Right-handed alpha
Helix 76	AI4	E	99	104	Right-handed 310
Helix 77	AI5	E	106	116	Right-handed alpha
Helix 78	AI6	E	163	174	Right-handed alpha
Helix 79	AI7	E	222	248	Right-handed alpha
Helix 80	AI8	E	264	287	Right-handed alpha
Helix 81	AI9	E	292	305	Right-handed alpha
Helix 82	AJ1	E	307	315	Right-handed alpha
Helix 83	AJ2	E	321	327	Right-handed 310
Helix 84	AJ3	E	328	338	Right-handed alpha
Helix 85	AJ4	E	348	362	Right-handed alpha
Helix 86	AJ5	E	373	383	Right-handed alpha
Helix 87	AJ6	E	384	387	Right-handed 310
Helix 88	AJ7	E	409	417	Right-handed alpha
Helix 89	AJ8	E	431	448	Right-handed alpha
Helix 90	AJ9	E	449	451	Right-handed 310
Helix 91	AK1	F	15	21	Right-handed 310
Helix 92	AK2	F	23	35	Right-handed alpha
Helix 93	AK3	F	36	38	Right-handed 310
Helix 94	AK4	F	39	41	Right-handed 310
Helix 95	AK5	F	42	59	Right-handed alpha
Helix 96	AK6	F	72	77	Right-handed alpha
Helix 97	AK7	F	78	89	Right-handed alpha
Helix 98	AK8	F	98	108	Right-handed alpha
Helix 99	AK9	F	121	128	Right-handed alpha
Helix 100	AL1	F	140	165	Right-handed alpha
Helix 101	AL2	F	171	187	Right-handed alpha
Helix 102	AL3	F	189	193	Right-handed 310
Helix 103	AL4	F	194	202	Right-handed alpha
Helix 104	AL5	F	214	225	Right-handed alpha
Helix 105	AL6	F	234	245	Right-handed alpha
Helix 106	AL7	F	262	272	Right-handed alpha
Helix 107	AL8	F	284	288	Right-handed 310
Helix 108	AL9	F	294	301	Right-handed alpha
Helix 109	AM1	F	316	326	Right-handed alpha
Helix 110	AM2	G	31	35	Right-handed 310
Helix 111	AM3	G	36	44	Right-handed alpha
Helix 112	AM4	G	45	47	Right-handed 310
Helix 113	AM5	G	48	65	Right-handed alpha
Helix 114	AM6	G	99	104	Right-handed 310
Helix 115	AM7	G	105	116	Right-handed alpha
Helix 116	AM8	G	163	172	Right-handed alpha
Helix 117	AM9	G	222	247	Right-handed alpha
Helix 118	AN1	G	264	287	Right-handed alpha
Helix 119	AN2	G	292	305	Right-handed alpha
Helix 120	AN3	G	307	316	Right-handed alpha
Helix 121	AN4	G	328	336	Right-handed alpha
Helix 122	AN5	G	348	361	Right-handed alpha
Helix 123	AN6	G	373	385	Right-handed alpha
Helix 124	AN7	G	409	417	Right-handed alpha
Helix 125	AN8	G	431	453	Right-handed alpha
Helix 126	AN9	H	15	21	Right-handed 310
Helix 127	AO1	H	23	34	Right-handed alpha
Helix 128	AO2	H	35	39	Right-handed 310
Helix 129	AO3	H	40	59	Right-handed alpha
Helix 130	AO4	H	72	77	Right-handed alpha
Helix 131	AO5	H	78	89	Right-handed alpha
Helix 132	AO6	H	98	108	Right-handed alpha
Helix 133	AO7	H	121	128	Right-handed alpha
Helix 134	AO8	H	140	164	Right-handed alpha
Helix 135	AO9	H	171	187	Right-handed alpha
Helix 136	AP1	H	189	193	Right-handed 310
Helix 137	AP2	H	194	202	Right-handed alpha
Helix 138	AP3	H	214	224	Right-handed alpha
Helix 139	AP4	H	234	245	Right-handed alpha
Helix 140	AP5	H	262	272	Right-handed alpha
Helix 141	AP6	H	284	288	Right-handed 310
Helix 142	AP7	H	294	301	Right-handed alpha
Helix 143	AP8	H	316	326	Right-handed alpha
Helix 144	AP9	I	31	35	Right-handed 310
Helix 145	AQ1	I	36	44	Right-handed alpha
Helix 146	AQ2	I	45	48	Right-handed 310
Helix 147	AQ3	I	49	65	Right-handed alpha
Helix 148	AQ4	I	99	104	Right-handed 310
Helix 149	AQ5	I	105	116	Right-handed alpha
Helix 150	AQ6	I	164	174	Right-handed alpha
Helix 151	AQ7	I	222	246	Right-handed alpha
Helix 152	AQ8	I	264	287	Right-handed alpha
Helix 153	AQ9	I	292	306	Right-handed alpha
Helix 154	AR1	I	307	316	Right-handed alpha
Helix 155	AR2	I	328	338	Right-handed alpha
Helix 156	AR3	I	348	361	Right-handed alpha
Helix 157	AR4	I	373	385	Right-handed alpha
Helix 158	AR5	I	409	417	Right-handed alpha
Helix 159	AR6	I	431	452	Right-handed alpha
Helix 160	AR7	J	15	21	Right-handed 310
Helix 161	AR8	J	23	34	Right-handed alpha
Helix 162	AR9	J	34	39	Right-handed alpha
Helix 163	AS1	J	39	59	Right-handed alpha
Helix 164	AS2	J	72	77	Right-handed alpha
Helix 165	AS3	J	78	89	Right-handed alpha
Helix 166	AS4	J	98	108	Right-handed alpha
Helix 167	AS5	J	121	128	Right-handed alpha
Helix 168	AS6	J	140	164	Right-handed alpha
Helix 169	AS7	J	171	187	Right-handed alpha
Helix 170	AS8	J	189	193	Right-handed 310
Helix 171	AS9	J	194	202	Right-handed alpha
Helix 172	AT1	J	214	225	Right-handed alpha
Helix 173	AT2	J	234	244	Right-handed alpha
Helix 174	AT3	J	262	272	Right-handed alpha
Helix 175	AT4	J	284	288	Right-handed 310
Helix 176	AT5	J	294	301	Right-handed alpha
Helix 177	AT6	J	316	326	Right-handed alpha
Helix 178	AT7	K	31	35	Right-handed 310
Helix 179	AT8	K	36	43	Right-handed alpha
Helix 180	AT9	K	44	46	Right-handed 310
Helix 181	AU1	K	49	65	Right-handed alpha
Helix 182	AU2	K	99	104	Right-handed 310
Helix 183	AU3	K	105	116	Right-handed alpha
Helix 184	AU4	K	163	174	Right-handed alpha
Helix 185	AU5	K	222	248	Right-handed alpha
Helix 186	AU6	K	264	287	Right-handed alpha
Helix 187	AU7	K	292	305	Right-handed alpha
Helix 188	AU8	K	307	316	Right-handed alpha
Helix 189	AU9	K	328	336	Right-handed alpha
Helix 190	AV1	K	348	361	Right-handed alpha
Helix 191	AV2	K	373	383	Right-handed alpha
Helix 192	AV3	K	384	387	Right-handed 310
Helix 193	AV4	K	409	417	Right-handed alpha
Helix 194	AV5	K	431	443	Right-handed alpha
Helix 195	AV6	K	443	454	Right-handed alpha
Helix 196	AV7	L	15	21	Right-handed 310
Helix 197	AV8	L	23	32	Right-handed alpha
Helix 198	AV9	L	34	38	Right-handed 310
Helix 199	AW1	L	39	59	Right-handed alpha
Helix 200	AW2	L	72	77	Right-handed alpha
Helix 201	AW3	L	78	89	Right-handed alpha
Helix 202	AW4	L	99	108	Right-handed alpha
Helix 203	AW5	L	121	128	Right-handed alpha
Helix 204	AW6	L	140	164	Right-handed alpha
Helix 205	AW7	L	171	187	Right-handed alpha
Helix 206	AW8	L	190	193	Right-handed 310
Helix 207	AW9	L	194	202	Right-handed alpha
Helix 208	AX1	L	214	225	Right-handed alpha
Helix 209	AX2	L	234	246	Right-handed alpha
Helix 210	AX3	L	262	272	Right-handed alpha
Helix 211	AX4	L	284	288	Right-handed 310
Helix 212	AX5	L	294	301	Right-handed alpha
Helix 213	AX6	L	316	326	Right-handed alpha

There are 27 sheets in PDB entry 6DFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	124	126	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	157	160	parallel
Strand 3	A	92	97	parallel
Strand 4	A	365	370	parallel
Strand 5	A	389	395	parallel
Strand 6	A	419	427	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	211	214	anti-parallel
Strand 3	A	205	207	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	94	96	parallel
Strand 3	B	65	70	parallel
Strand 4	B	254	259	parallel
Strand 5	B	276	281	parallel
Strand 6	B	309	314	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	136	139	anti-parallel
Strand 3	B	130	133	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	124	126	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	320	first strand
Strand 2	C	157	160	parallel
Strand 3	C	92	97	parallel
Strand 4	C	365	370	parallel
Strand 5	C	389	396	parallel
Strand 6	C	419	429	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	211	214	anti-parallel
Strand 3	C	205	207	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	94	96	parallel
Strand 3	D	65	70	parallel
Strand 4	D	254	259	parallel
Strand 5	D	276	281	parallel
Strand 6	D	309	314	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	136	139	anti-parallel
Strand 3	D	130	133	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	319	320	first strand
Strand 2	E	157	160	parallel
Strand 3	E	92	97	parallel
Strand 4	E	365	370	parallel
Strand 5	E	389	396	parallel
Strand 6	E	419	429	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	211	214	anti-parallel
Strand 3	E	205	207	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	207	first strand
Strand 2	F	94	97	parallel
Strand 3	F	65	70	parallel
Strand 4	F	254	259	parallel
Strand 5	F	276	281	parallel
Strand 6	F	309	314	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	136	139	anti-parallel
Strand 3	F	130	133	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	319	320	first strand
Strand 2	G	157	160	parallel
Strand 3	G	92	97	parallel
Strand 4	G	365	370	parallel
Strand 5	G	389	395	parallel
Strand 6	G	419	427	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	178	first strand
Strand 2	G	211	213	anti-parallel
Strand 3	G	206	208	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	206	207	first strand
Strand 2	H	94	96	parallel
Strand 3	H	65	70	parallel
Strand 4	H	254	259	parallel
Strand 5	H	276	281	parallel
Strand 6	H	309	314	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	115	first strand
Strand 2	H	136	139	anti-parallel
Strand 3	H	130	133	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	319	320	first strand
Strand 2	I	157	160	parallel
Strand 3	I	92	97	parallel
Strand 4	I	365	370	parallel
Strand 5	I	389	396	parallel
Strand 6	I	419	429	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	177	178	first strand
Strand 2	I	211	214	anti-parallel
Strand 3	I	205	207	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	206	207	first strand
Strand 2	J	94	97	parallel
Strand 3	J	65	70	parallel
Strand 4	J	254	259	parallel
Strand 5	J	276	281	parallel
Strand 6	J	309	314	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	115	first strand
Strand 2	J	136	139	anti-parallel
Strand 3	J	130	133	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	88	90	first strand
Strand 2	K	124	126	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	319	320	first strand
Strand 2	K	157	160	parallel
Strand 3	K	92	97	parallel
Strand 4	K	365	370	parallel
Strand 5	K	389	396	parallel
Strand 6	K	419	429	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	177	178	first strand
Strand 2	K	211	213	anti-parallel
Strand 3	K	206	207	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	206	207	first strand
Strand 2	L	94	97	parallel
Strand 3	L	65	70	parallel
Strand 4	L	254	259	parallel
Strand 5	L	276	281	parallel
Strand 6	L	309	314	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	115	first strand
Strand 2	L	136	139	anti-parallel
Strand 3	L	130	133	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DFT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFT