Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DFU entry

There are 2 chains in PDB entry 6DFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 334
B
 ALA 2LYS 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6DFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 23Right-handed alpha
Helix 2
AA2
A
23 32Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
52 70Right-handed alpha
Helix 5
AA5
A
83 85Right-handed 310
Helix 6
AA6
A
86 98Right-handed alpha
Helix 7
AA7
A
100 106Right-handed alpha
Helix 8
AA8
A
107 117Right-handed alpha
Helix 9
AA9
A
118 121Right-handed 310
Helix 10
AB1
A
122 138Right-handed alpha
Helix 11
AB2
A
147 149Right-handed 310
Helix 12
AB3
A
150 169Right-handed alpha
Helix 13
AB4
A
202 206Right-handed 310
Helix 14
AB5
A
212 222Right-handed alpha
Helix 15
AB6
A
240 255Right-handed alpha
Helix 16
AB7
A
257 265Right-handed alpha
Helix 17
AB8
A
269 298Right-handed alpha
Helix 18
AB9
A
298 329Right-handed alpha
Helix 19
AC1
B
17 23Right-handed alpha
Helix 20
AC2
B
23 32Right-handed alpha
Helix 21
AC3
B
42 47Right-handed alpha
Helix 22
AC4
B
52 71Right-handed alpha
Helix 23
AC5
B
83 85Right-handed 310
Helix 24
AC6
B
86 97Right-handed alpha
Helix 25
AC7
B
100 106Right-handed alpha
Helix 26
AC8
B
107 118Right-handed alpha
Helix 27
AC9
B
119 121Right-handed 310
Helix 28
AD1
B
122 138Right-handed alpha
Helix 29
AD2
B
147 149Right-handed 310
Helix 30
AD3
B
150 169Right-handed alpha
Helix 31
AD4
B
202 206Right-handed 310
Helix 32
AD5
B
212 222Right-handed alpha
Helix 33
AD6
B
240 255Right-handed alpha
Helix 34
AD7
B
257 265Right-handed alpha
Helix 35
AD8
B
269 297Right-handed alpha
Helix 36
AD9
B
298 329Right-handed alpha
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There are 4 sheets in PDB entry 6DFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
36 41parallel
Strand 3
A
78 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
176 177parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
36 41parallel
Strand 3
B
78 81parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
176 177parallel
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