Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DFX entry

There are 7 chains in PDB entry 6DFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	GLU 179
B	VAL -27	ALA 190
D	ILE 1	GLU 179
E	VAL -27	ALA 190
G	GLN 8	PRO 201
H	GLY 3	ALA 245
I	GLN 8	LEU 64

There are 24 helices in PDB entry 6DFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	52	Right-handed alpha
Helix 2	AA2	A	55	77	Right-handed alpha
Helix 3	AA3	B	54	64	Right-handed alpha
Helix 4	AA4	B	64	78	Right-handed alpha
Helix 5	AA5	B	78	88	Right-handed alpha
Helix 6	AA6	B	89	93	Right-handed 310
Helix 7	AA7	D	45	52	Right-handed alpha
Helix 8	AA8	D	55	77	Right-handed alpha
Helix 9	AA9	E	54	64	Right-handed alpha
Helix 10	AB1	E	64	78	Right-handed alpha
Helix 11	AB2	E	78	89	Right-handed alpha
Helix 12	AB3	E	90	93	Right-handed 310
Helix 13	AB4	G	79	83	Right-handed 310
Helix 14	AB5	G	165	168	Right-handed 310
Helix 15	AB6	H	82	86	Right-handed 310
Helix 16	AB7	H	118	122	Right-handed 310
Helix 17	AB8	H	133	140	Right-handed alpha
Helix 18	AB9	H	200	205	Right-handed alpha
Helix 19	AC1	I	79	83	Right-handed 310
Helix 20	AC2	I	184	189	Right-handed alpha
Helix 21	AC3	J	82	86	Right-handed 310
Helix 22	AC4	J	112	116	Right-handed 310
Helix 23	AC5	J	127	135	Right-handed alpha
Helix 24	AC6	J	194	199	Right-handed alpha

There are 35 sheets in PDB entry 6DFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	14	anti-parallel
Strand 5	B	8	18	anti-parallel
Strand 6	B	23	32	anti-parallel
Strand 7	B	35	41	anti-parallel
Strand 8	B	47	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	132	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	174	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	115	122	anti-parallel
Strand 3	B	155	161	anti-parallel
Strand 4	B	142	144	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	115	122	anti-parallel
Strand 3	B	155	161	anti-parallel
Strand 4	B	148	149	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	B	128	133	anti-parallel
Strand 3	B	171	176	anti-parallel
Strand 4	B	184	188	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	43	first strand
Strand 2	D	29	35	anti-parallel
Strand 3	D	19	26	anti-parallel
Strand 4	D	5	14	anti-parallel
Strand 5	E	8	18	anti-parallel
Strand 6	E	23	32	anti-parallel
Strand 7	E	35	41	anti-parallel
Strand 8	E	47	49	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	103	112	anti-parallel
Strand 3	D	145	153	anti-parallel
Strand 4	D	132	134	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	103	112	anti-parallel
Strand 3	D	145	153	anti-parallel
Strand 4	D	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	128	first strand
Strand 2	D	118	123	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	174	177	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	102	first strand
Strand 2	E	114	122	anti-parallel
Strand 3	E	155	162	anti-parallel
Strand 4	E	142	144	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	102	first strand
Strand 2	E	114	122	anti-parallel
Strand 3	E	155	162	anti-parallel
Strand 4	E	148	149	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	137	first strand
Strand 2	E	128	133	anti-parallel
Strand 3	E	171	176	anti-parallel
Strand 4	E	184	188	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	106	111	parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	30	36	anti-parallel
Strand 5	G	42	49	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	106	111	parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	101	102	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	70	75	anti-parallel
Strand 3	G	60	65	anti-parallel
Strand 4	G	54	57	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	123	first strand
Strand 2	G	133	138	anti-parallel
Strand 3	G	169	178	anti-parallel
Strand 4	G	155	156	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	123	first strand
Strand 2	G	133	138	anti-parallel
Strand 3	G	169	178	anti-parallel
Strand 4	G	160	164	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	74	78	anti-parallel
Strand 4	H	64	68	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	111	116	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	31	38	anti-parallel
Strand 5	H	42	50	anti-parallel
Strand 6	H	53	57	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	111	116	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	99	107	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	168	first strand
Strand 2	H	157	163	anti-parallel
Strand 3	H	209	216	anti-parallel
Strand 4	H	235	242	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	106	111	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	30	36	anti-parallel
Strand 5	I	42	49	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	106	111	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	101	102	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	23	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	60	65	anti-parallel
Strand 4	I	54	57	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	123	first strand
Strand 2	I	133	138	anti-parallel
Strand 3	I	173	178	anti-parallel
Strand 4	I	155	156	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	162	first strand
Strand 2	J	166	168	anti-parallel
Strand 3	J	184	193	anti-parallel
Strand 4	J	136	146	anti-parallel
Strand 5	J	120	124	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	162	first strand
Strand 2	J	166	168	anti-parallel
Strand 3	J	184	193	anti-parallel
Strand 4	J	173	174	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	74	78	anti-parallel
Strand 4	J	64	68	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	105	110	parallel
Strand 3	J	87	94	anti-parallel
Strand 4	J	31	38	anti-parallel
Strand 5	J	42	50	anti-parallel
Strand 6	J	53	57	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	105	110	parallel
Strand 3	J	87	94	anti-parallel
Strand 4	J	99	101	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	160	162	first strand
Strand 2	J	151	157	anti-parallel
Strand 3	J	203	210	anti-parallel
Strand 4	J	229	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DFX