Analysis of interatomic Contacts of Structural Units in PDB entry:
6DG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DG3 entry

There are 6 chains in PDB entry 6DG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	PHE 258
B	LEU 11	ARG 259
C	THR 3	PHE 258
D	THR 3	PHE 258
E	LYS 8	PHE 258
F	ALA 2	ILE 193

There are154 helices in PDB entry 6DG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	19	Right-handed alpha
Helix 2	AA2	A	28	43	Right-handed alpha
Helix 3	AA3	A	58	73	Right-handed alpha
Helix 4	AA4	A	82	85	Right-handed 310
Helix 5	AA5	A	86	91	Right-handed alpha
Helix 6	AA6	A	95	116	Right-handed alpha
Helix 7	AA7	A	139	142	Right-handed 310
Helix 8	AA8	A	146	151	Right-handed alpha
Helix 9	AA9	A	155	166	Right-handed alpha
Helix 10	AB1	A	177	182	Right-handed 310
Helix 11	AB2	A	189	206	Right-handed alpha
Helix 12	AB3	A	225	227	Right-handed 310
Helix 13	AB4	A	228	233	Right-handed alpha
Helix 14	AB5	A	235	246	Right-handed alpha
Helix 15	AB6	B	12	16	Right-handed alpha
Helix 16	AB7	B	29	43	Right-handed alpha
Helix 17	AB8	B	58	71	Right-handed alpha
Helix 18	AB9	B	82	85	Right-handed 310
Helix 19	AC1	B	86	91	Right-handed alpha
Helix 20	AC2	B	95	116	Right-handed alpha
Helix 21	AC3	B	177	182	Right-handed 310
Helix 22	AC4	B	189	206	Right-handed alpha
Helix 23	AC5	B	225	233	Right-handed alpha
Helix 24	AC6	B	235	245	Right-handed alpha
Helix 25	AC7	C	4	19	Right-handed alpha
Helix 26	AC8	C	28	43	Right-handed alpha
Helix 27	AC9	C	58	73	Right-handed alpha
Helix 28	AD1	C	82	85	Right-handed 310
Helix 29	AD2	C	86	91	Right-handed alpha
Helix 30	AD3	C	95	116	Right-handed alpha
Helix 31	AD4	C	147	151	Right-handed alpha
Helix 32	AD5	C	154	166	Right-handed alpha
Helix 33	AD6	C	177	182	Right-handed 310
Helix 34	AD7	C	189	206	Right-handed alpha
Helix 35	AD8	C	225	227	Right-handed 310
Helix 36	AD9	C	228	233	Right-handed alpha
Helix 37	AE1	C	235	246	Right-handed alpha
Helix 38	AE2	D	4	19	Right-handed alpha
Helix 39	AE3	D	28	43	Right-handed alpha
Helix 40	AE4	D	58	73	Right-handed alpha
Helix 41	AE5	D	82	85	Right-handed 310
Helix 42	AE6	D	86	91	Right-handed alpha
Helix 43	AE7	D	95	116	Right-handed alpha
Helix 44	AE8	D	139	142	Right-handed 310
Helix 45	AE9	D	154	166	Right-handed alpha
Helix 46	AF1	D	177	182	Right-handed 310
Helix 47	AF2	D	189	206	Right-handed alpha
Helix 48	AF3	D	225	227	Right-handed 310
Helix 49	AF4	D	228	233	Right-handed alpha
Helix 50	AF5	D	235	246	Right-handed alpha
Helix 51	AF6	E	9	19	Right-handed alpha
Helix 52	AF7	E	28	43	Right-handed alpha
Helix 53	AF8	E	58	73	Right-handed alpha
Helix 54	AF9	E	82	85	Right-handed 310
Helix 55	AG1	E	86	91	Right-handed alpha
Helix 56	AG2	E	95	116	Right-handed alpha
Helix 57	AG3	E	155	164	Right-handed alpha
Helix 58	AG4	E	177	182	Right-handed 310
Helix 59	AG5	E	189	206	Right-handed alpha
Helix 60	AG6	E	225	227	Right-handed 310
Helix 61	AG7	E	228	233	Right-handed alpha
Helix 62	AG8	E	235	246	Right-handed alpha
Helix 63	AG9	F	3	19	Right-handed alpha
Helix 64	AH1	F	28	43	Right-handed alpha
Helix 65	AH2	F	58	73	Right-handed alpha
Helix 66	AH3	F	82	85	Right-handed 310
Helix 67	AH4	F	86	91	Right-handed alpha
Helix 68	AH5	F	95	115	Right-handed alpha
Helix 69	AH6	F	146	151	Right-handed alpha
Helix 70	AH7	F	154	166	Right-handed alpha
Helix 71	AH8	F	177	182	Right-handed 310
Helix 72	AH9	F	189	206	Right-handed alpha
Helix 73	AI1	F	225	229	Right-handed 310
Helix 74	AI2	F	230	234	Right-handed 310
Helix 75	AI3	F	235	246	Right-handed alpha
Helix 76	AI4	G	4	19	Right-handed alpha
Helix 77	AI5	G	28	43	Right-handed alpha
Helix 78	AI6	G	58	73	Right-handed alpha
Helix 79	AI7	G	82	85	Right-handed 310
Helix 80	AI8	G	86	91	Right-handed alpha
Helix 81	AI9	G	95	116	Right-handed alpha
Helix 82	AJ1	G	135	143	Right-handed alpha
Helix 83	AJ2	G	147	151	Right-handed alpha
Helix 84	AJ3	G	154	166	Right-handed alpha
Helix 85	AJ4	G	177	182	Right-handed 310
Helix 86	AJ5	G	189	206	Right-handed alpha
Helix 87	AJ6	G	225	230	Right-handed alpha
Helix 88	AJ7	G	231	234	Right-handed 310
Helix 89	AJ8	G	235	246	Right-handed alpha
Helix 90	AJ9	H	4	19	Right-handed alpha
Helix 91	AK1	H	28	43	Right-handed alpha
Helix 92	AK2	H	58	73	Right-handed alpha
Helix 93	AK3	H	82	85	Right-handed 310
Helix 94	AK4	H	86	91	Right-handed alpha
Helix 95	AK5	H	95	116	Right-handed alpha
Helix 96	AK6	H	139	143	Right-handed 310
Helix 97	AK7	H	146	151	Right-handed alpha
Helix 98	AK8	H	154	166	Right-handed alpha
Helix 99	AK9	H	177	182	Right-handed 310
Helix 100	AL1	H	189	206	Right-handed alpha
Helix 101	AL2	H	225	227	Right-handed 310
Helix 102	AL3	H	228	233	Right-handed alpha
Helix 103	AL4	H	235	246	Right-handed alpha
Helix 104	AL5	I	4	19	Right-handed alpha
Helix 105	AL6	I	28	43	Right-handed alpha
Helix 106	AL7	I	58	73	Right-handed alpha
Helix 107	AL8	I	82	85	Right-handed 310
Helix 108	AL9	I	86	91	Right-handed alpha
Helix 109	AM1	I	95	116	Right-handed alpha
Helix 110	AM2	I	138	142	Right-handed alpha
Helix 111	AM3	I	147	151	Right-handed alpha
Helix 112	AM4	I	154	166	Right-handed alpha
Helix 113	AM5	I	177	182	Right-handed 310
Helix 114	AM6	I	189	206	Right-handed alpha
Helix 115	AM7	I	225	230	Right-handed alpha
Helix 116	AM8	I	231	234	Right-handed 310
Helix 117	AM9	I	235	245	Right-handed alpha
Helix 118	AN1	J	3	19	Right-handed alpha
Helix 119	AN2	J	28	43	Right-handed alpha
Helix 120	AN3	J	58	73	Right-handed alpha
Helix 121	AN4	J	82	85	Right-handed 310
Helix 122	AN5	J	86	91	Right-handed alpha
Helix 123	AN6	J	95	115	Right-handed alpha
Helix 124	AN7	J	146	151	Right-handed alpha
Helix 125	AN8	J	154	166	Right-handed alpha
Helix 126	AN9	J	177	182	Right-handed 310
Helix 127	AO1	J	189	206	Right-handed alpha
Helix 128	AO2	J	225	227	Right-handed 310
Helix 129	AO3	J	228	233	Right-handed alpha
Helix 130	AO4	J	235	246	Right-handed alpha
Helix 131	AO5	K	4	19	Right-handed alpha
Helix 132	AO6	K	28	43	Right-handed alpha
Helix 133	AO7	K	58	72	Right-handed alpha
Helix 134	AO8	K	82	85	Right-handed 310
Helix 135	AO9	K	86	91	Right-handed alpha
Helix 136	AP1	K	95	116	Right-handed alpha
Helix 137	AP2	K	146	151	Right-handed alpha
Helix 138	AP3	K	155	166	Right-handed alpha
Helix 139	AP4	K	177	182	Right-handed 310
Helix 140	AP5	K	189	206	Right-handed alpha
Helix 141	AP6	K	225	234	Right-handed 310
Helix 142	AP7	K	235	246	Right-handed alpha
Helix 143	AP8	L	4	19	Right-handed alpha
Helix 144	AP9	L	28	43	Right-handed alpha
Helix 145	AQ1	L	58	73	Right-handed alpha
Helix 146	AQ2	L	82	85	Right-handed 310
Helix 147	AQ3	L	86	91	Right-handed alpha
Helix 148	AQ4	L	95	116	Right-handed alpha
Helix 149	AQ5	L	146	151	Right-handed alpha
Helix 150	AQ6	L	154	166	Right-handed alpha
Helix 151	AQ7	L	177	182	Right-handed 310
Helix 152	AQ8	L	189	206	Right-handed alpha
Helix 153	AQ9	L	225	233	Right-handed alpha
Helix 154	AR1	L	235	246	Right-handed alpha

There are 18 sheets in PDB entry 6DG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	47	54	parallel
Strand 3	A	21	24	parallel
Strand 4	A	119	121	parallel
Strand 5	A	144	145	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	250	254	parallel
Strand 4	L	250	254	anti-parallel
Strand 5	L	219	223	parallel
Strand 6	L	212	216	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	81	first strand
Strand 2	B	47	54	parallel
Strand 3	B	21	24	parallel
Strand 4	B	120	121	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	219	223	anti-parallel
Strand 3	B	250	254	parallel
Strand 4	F	250	254	anti-parallel
Strand 5	F	219	223	parallel
Strand 6	F	212	216	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	81	first strand
Strand 2	C	47	54	parallel
Strand 3	C	21	24	parallel
Strand 4	C	120	122	parallel
Strand 5	C	145	146	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	216	first strand
Strand 2	C	219	223	anti-parallel
Strand 3	C	250	254	parallel
Strand 4	H	250	254	anti-parallel
Strand 5	H	219	223	parallel
Strand 6	H	212	216	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	81	first strand
Strand 2	D	47	54	parallel
Strand 3	D	21	24	parallel
Strand 4	D	119	121	parallel
Strand 5	D	144	145	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	216	first strand
Strand 2	D	219	223	anti-parallel
Strand 3	D	250	254	parallel
Strand 4	G	250	254	anti-parallel
Strand 5	G	219	223	parallel
Strand 6	G	212	216	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	81	first strand
Strand 2	E	47	54	parallel
Strand 3	E	21	24	parallel
Strand 4	E	120	121	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	216	first strand
Strand 2	E	219	223	anti-parallel
Strand 3	E	250	254	parallel
Strand 4	J	250	254	anti-parallel
Strand 5	J	219	223	parallel
Strand 6	J	212	216	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	81	first strand
Strand 2	F	47	54	parallel
Strand 3	F	21	24	parallel
Strand 4	F	119	121	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	81	first strand
Strand 2	G	47	54	parallel
Strand 3	G	21	24	parallel
Strand 4	G	119	122	parallel
Strand 5	G	145	146	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	81	first strand
Strand 2	H	47	54	parallel
Strand 3	H	21	24	parallel
Strand 4	H	119	121	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	80	first strand
Strand 2	I	47	53	parallel
Strand 3	I	21	24	parallel
Strand 4	I	119	122	parallel
Strand 5	I	145	146	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	212	216	first strand
Strand 2	I	219	223	anti-parallel
Strand 3	I	250	254	parallel
Strand 4	K	250	254	anti-parallel
Strand 5	K	219	223	parallel
Strand 6	K	212	216	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	80	first strand
Strand 2	J	47	53	parallel
Strand 3	J	21	24	parallel
Strand 4	J	119	121	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	24	first strand
Strand 2	K	47	54	parallel
Strand 3	K	76	81	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	75	81	first strand
Strand 2	L	47	54	parallel
Strand 3	L	21	24	parallel
Strand 4	L	119	121	parallel
Strand 5	L	144	145	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DG3