Analysis of interatomic Contacts of Structural Units in PDB entry:
6DG4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DG4 entry

There is 1 chain in PDB entry 6DG4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6DG4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
45 51Right-handed alpha
Helix 3
AA3
A
61 81Right-handed alpha
Helix 4
AA4
A
95 104Right-handed alpha
Helix 5
AA5
A
105 107Right-handed 310
Helix 6
AA6
A
108 115Right-handed alpha
Helix 7
AA7
A
121 125Right-handed 310
Helix 8
AA8
A
145 147Right-handed 310
Helix 9
AA9
A
154 158Right-handed 310
Helix 10
AB1
A
162 178Right-handed alpha
Helix 11
AB2
A
179 181Right-handed 310
Helix 12
AB3
A
182 186Right-handed 310
Helix 13
AB4
A
198 200Right-handed 310
Helix 14
AB5
A
201 216Right-handed alpha
Helix 15
AB6
A
218 222Right-handed 310
Helix 16
AB7
A
224 226Right-handed 310
Helix 17
AB8
A
227 242Right-handed alpha
Helix 18
AB9
A
245 249Right-handed 310
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There are 2 sheets in PDB entry 6DG4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
43 44anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
127 134parallel
Strand 3
A
137 144anti-parallel
Strand 4
A
149 153anti-parallel
Strand 5
A
187 188parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il