Analysis of interatomic Contacts of Structural Units in PDB entry:
6DG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DG5 entry

There are 3 chains in PDB entry 6DG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1SER 100
B
 ALA 27ALA 235
C
 PRO 56GLY 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6DG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 24Right-handed alpha
Helix 2
AA2
A
34 55Right-handed alpha
Helix 3
AA3
A
57 75Right-handed alpha
Helix 4
AA4
A
79 100Right-handed alpha
Helix 5
AA5
B
126 130Right-handed 310
Helix 6
AA6
B
162 164Right-handed 310
Helix 7
AA7
C
75 79Right-handed 310
Helix 8
AA8
C
120 122Right-handed 310
Helix 9
AA9
C
147 150Right-handed 310
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There are 8 sheets in PDB entry 6DG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
83 89anti-parallel
Strand 4
B
77 80anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
105 112anti-parallel
Strand 4
B
117 125anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 144first strand
Strand 2
B
149 154anti-parallel
Strand 3
B
193 196anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 187first strand
Strand 2
B
166 174anti-parallel
Strand 3
B
204 213anti-parallel
Strand 4
B
228 231anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 108first strand
Strand 2
C
111 118anti-parallel
Strand 3
C
69 73anti-parallel
Strand 4
C
61 65anti-parallel
Strand 5
C
152 153parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
86 91anti-parallel
Strand 3
C
128 133anti-parallel
Strand 4
C
141 146anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 163first strand
Strand 2
C
170 175anti-parallel
Strand 3
C
208 211anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 204first strand
Strand 2
C
185 191anti-parallel
Strand 3
C
220 227anti-parallel
Strand 4
C
245 247anti-parallel
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