Analysis of interatomic Contacts of Structural Units in PDB entry:
6DG7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DG7 entry

There are 5 chains in PDB entry 6DG7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	SER 462
B	THR 8	SER 462
C	THR 8	SER 462
D	THR 8	SER 462
E	THR 8	SER 462

There are 35 helices in PDB entry 6DG7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed alpha
Helix 2	AA2	A	170	176	Right-handed alpha
Helix 3	AA3	A	221	242	Right-handed alpha
Helix 4	AA4	A	249	271	Right-handed alpha
Helix 5	AA5	A	281	308	Right-handed alpha
Helix 6	AA6	A	317	332	Right-handed alpha
Helix 7	AA7	A	398	462	Right-handed alpha
Helix 8	AA8	B	12	20	Right-handed alpha
Helix 9	AA9	B	170	176	Right-handed alpha
Helix 10	AB1	B	221	242	Right-handed alpha
Helix 11	AB2	B	249	271	Right-handed alpha
Helix 12	AB3	B	281	308	Right-handed alpha
Helix 13	AB4	B	317	332	Right-handed alpha
Helix 14	AB5	B	398	462	Right-handed alpha
Helix 15	AB6	C	12	20	Right-handed alpha
Helix 16	AB7	C	170	176	Right-handed alpha
Helix 17	AB8	C	221	242	Right-handed alpha
Helix 18	AB9	C	249	271	Right-handed alpha
Helix 19	AC1	C	281	308	Right-handed alpha
Helix 20	AC2	C	317	332	Right-handed alpha
Helix 21	AC3	C	398	462	Right-handed alpha
Helix 22	AC4	D	12	20	Right-handed alpha
Helix 23	AC5	D	170	176	Right-handed alpha
Helix 24	AC6	D	221	242	Right-handed alpha
Helix 25	AC7	D	249	271	Right-handed alpha
Helix 26	AC8	D	281	308	Right-handed alpha
Helix 27	AC9	D	317	332	Right-handed alpha
Helix 28	AD1	D	398	462	Right-handed alpha
Helix 29	AD2	E	12	20	Right-handed alpha
Helix 30	AD3	E	170	176	Right-handed alpha
Helix 31	AD4	E	221	242	Right-handed alpha
Helix 32	AD5	E	249	271	Right-handed alpha
Helix 33	AD6	E	281	308	Right-handed alpha
Helix 34	AD7	E	317	332	Right-handed alpha
Helix 35	AD8	E	398	462	Right-handed alpha

There are 20 sheets in PDB entry 6DG7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	134	first strand
Strand 2	A	57	69	anti-parallel
Strand 3	A	37	52	anti-parallel
Strand 4	A	163	166	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	115	116	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	154	first strand
Strand 2	A	206	218	anti-parallel
Strand 3	A	187	189	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	154	first strand
Strand 2	A	206	218	anti-parallel
Strand 3	A	193	200	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	134	first strand
Strand 2	B	57	69	anti-parallel
Strand 3	B	37	52	anti-parallel
Strand 4	B	163	166	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	115	116	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	154	first strand
Strand 2	B	206	218	anti-parallel
Strand 3	B	187	189	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	154	first strand
Strand 2	B	206	218	anti-parallel
Strand 3	B	193	200	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	134	first strand
Strand 2	C	57	69	anti-parallel
Strand 3	C	37	52	anti-parallel
Strand 4	C	163	166	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	115	116	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	154	first strand
Strand 2	C	206	218	anti-parallel
Strand 3	C	187	189	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	154	first strand
Strand 2	C	206	218	anti-parallel
Strand 3	C	193	200	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	134	first strand
Strand 2	D	57	69	anti-parallel
Strand 3	D	37	52	anti-parallel
Strand 4	D	163	166	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	115	116	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	154	first strand
Strand 2	D	206	218	anti-parallel
Strand 3	D	187	189	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	154	first strand
Strand 2	D	206	218	anti-parallel
Strand 3	D	193	200	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	134	first strand
Strand 2	E	57	69	anti-parallel
Strand 3	E	37	52	anti-parallel
Strand 4	E	163	166	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	115	116	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	154	first strand
Strand 2	E	206	218	anti-parallel
Strand 3	E	187	189	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	154	first strand
Strand 2	E	206	218	anti-parallel
Strand 3	E	193	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DG7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DG7