Analysis of interatomic Contacts of Structural Units in PDB entry:
6DGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DGF entry

There are 2 chains in PDB entry 6DGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 263MET 605
B
 SER -1ARG 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
275 287Right-handed alpha
Helix 2
AA2
A
288 297Right-handed alpha
Helix 3
AA3
A
298 303Right-handed 310
Helix 4
AA4
A
312 326Right-handed alpha
Helix 5
AA5
A
336 347Right-handed alpha
Helix 6
AA6
A
348 351Right-handed 310
Helix 7
AA7
A
357 373Right-handed alpha
Helix 8
AA8
A
391 405Right-handed alpha
Helix 9
AA9
A
411 416Right-handed alpha
Helix 10
AB1
A
455 463Right-handed alpha
Helix 11
AB2
A
469 473Right-handed 310
Helix 12
AB3
A
529 532Right-handed 310
Helix 13
AB4
A
582 586Right-handed 310
Helix 14
AB5
B
22 35Right-handed alpha
Helix 15
AB6
B
37 41Right-handed 310
Helix 16
AB7
B
56 60Right-handed 310
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There are 8 sheets in PDB entry 6DGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
333 334parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 438first strand
Strand 2
A
417 425anti-parallel
Strand 3
A
485 493anti-parallel
Strand 4
A
466 468anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 444first strand
Strand 2
A
497 503parallel
Strand 3
A
591 598anti-parallel
Strand 4
A
540 550anti-parallel
Strand 5
A
526 527anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 444first strand
Strand 2
A
497 503parallel
Strand 3
A
591 598anti-parallel
Strand 4
A
540 550anti-parallel
Strand 5
A
557 563anti-parallel
Strand 6
A
570 574anti-parallel
Strand 7
A
577 581anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
518 520parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
481 482anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 508first strand
Strand 2
A
511 514anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
1 6anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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