Analysis of interatomic Contacts of Structural Units in PDB entry:
6DGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DGI entry

There are 2 chains in PDB entry 6DGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ASN 332
B
 MSE 1ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6DGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
90 100Right-handed alpha
Helix 3
AA3
A
107 116Right-handed alpha
Helix 4
AA4
A
116 127Right-handed alpha
Helix 5
AA5
A
141 156Right-handed alpha
Helix 6
AA6
A
176 178Right-handed 310
Helix 7
AA7
A
179 189Right-handed alpha
Helix 8
AA8
A
233 239Right-handed 310
Helix 9
AA9
A
254 272Right-handed alpha
Helix 10
AB1
A
305 314Right-handed alpha
Helix 11
AB2
A
317 332Right-handed alpha
Helix 12
AB3
B
16 32Right-handed alpha
Helix 13
AB4
B
90 100Right-handed alpha
Helix 14
AB5
B
107 116Right-handed alpha
Helix 15
AB6
B
116 127Right-handed alpha
Helix 16
AB7
B
141 156Right-handed alpha
Helix 17
AB8
B
176 178Right-handed 310
Helix 18
AB9
B
179 188Right-handed alpha
Helix 19
AC1
B
228 232Right-handed 310
Helix 20
AC2
B
254 272Right-handed alpha
Helix 21
AC3
B
305 314Right-handed alpha
Helix 22
AC4
B
317 332Right-handed alpha
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There are 8 sheets in PDB entry 6DGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
65 67anti-parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
48 51anti-parallel
Strand 5
A
37 45anti-parallel
Strand 6
A
4 11parallel
Strand 7
A
77 81parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
158 162anti-parallel
Strand 4
A
171 174anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
203 212anti-parallel
Strand 3
A
222 225anti-parallel
Strand 4
A
245 247anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
203 212anti-parallel
Strand 3
A
277 284anti-parallel
Strand 4
A
290 296anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
65 67anti-parallel
Strand 3
B
56 60anti-parallel
Strand 4
B
48 51anti-parallel
Strand 5
B
37 45anti-parallel
Strand 6
B
4 11parallel
Strand 7
B
77 81parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
158 162anti-parallel
Strand 4
B
171 174anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
203 212anti-parallel
Strand 3
B
222 224anti-parallel
Strand 4
B
246 247anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
203 212anti-parallel
Strand 3
B
277 284anti-parallel
Strand 4
B
290 296anti-parallel
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