Analysis of interatomic Contacts of Structural Units in PDB entry:
6DGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DGN entry

There are 2 chains in PDB entry 6DGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLN 277
B
 LEU 5ALA 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 16Right-handed 310
Helix 2
AA2
A
45 63Right-handed alpha
Helix 3
AA3
A
84 95Right-handed alpha
Helix 4
AA4
A
96 116Right-handed alpha
Helix 5
AA5
A
117 120Right-handed 310
Helix 6
AA6
A
134 143Right-handed alpha
Helix 7
AA7
A
156 162Right-handed 310
Helix 8
AA8
A
168 177Right-handed alpha
Helix 9
AA9
A
178 189Right-handed alpha
Helix 10
AB1
A
194 200Right-handed alpha
Helix 11
AB2
A
211 224Right-handed alpha
Helix 12
AB3
A
226 242Right-handed alpha
Helix 13
AB4
A
244 260Right-handed alpha
Helix 14
AB5
A
263 276Right-handed alpha
Helix 15
AB6
B
8 15Right-handed alpha
Helix 16
AB7
B
47 56Right-handed alpha
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There are 3 sheets in PDB entry 6DGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
21 26anti-parallel
Strand 3
A
31 36anti-parallel
Strand 4
A
68 73parallel
Strand 5
A
123 128parallel
Strand 6
A
145 149parallel
Strand 7
A
205 207parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
131 133parallel
Strand 3
A
153 155parallel
Strand 4
A
192 193anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
20 24anti-parallel
Strand 4
B
88 94anti-parallel
Strand 5
B
73 85anti-parallel
Strand 6
B
62 70anti-parallel
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