Analysis of interatomic Contacts of Structural Units in PDB entry:
6DGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DGP entry

There are 4 chains in PDB entry 6DGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 207LEU 476
B
 GLU 207LEU 476
C
 LYS 640ASP 651
D
 LYS 640ASP 651
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6DGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
208 226Right-handed alpha
Helix 2
AA2
A
229 238Right-handed alpha
Helix 3
AA3
A
251 262Right-handed alpha
Helix 4
AA4
A
277 302Right-handed alpha
Helix 5
AA5
A
310 333Right-handed alpha
Helix 6
AA6
A
341 344Right-handed 310
Helix 7
AA7
A
350 355Right-handed alpha
Helix 8
AA8
A
357 361Right-handed 310
Helix 9
AA9
A
364 376Right-handed alpha
Helix 10
AB1
A
380 393Right-handed alpha
Helix 11
AB2
A
402 425Right-handed alpha
Helix 12
AB3
A
430 460Right-handed alpha
Helix 13
AB4
A
466 473Right-handed alpha
Helix 14
AB5
B
209 226Right-handed alpha
Helix 15
AB6
B
229 238Right-handed alpha
Helix 16
AB7
B
251 257Right-handed alpha
Helix 17
AB8
B
277 302Right-handed alpha
Helix 18
AB9
B
310 333Right-handed alpha
Helix 19
AC1
B
342 344Right-handed 310
Helix 20
AC2
B
350 355Right-handed alpha
Helix 21
AC3
B
363 376Right-handed alpha
Helix 22
AC4
B
380 393Right-handed alpha
Helix 23
AC5
B
402 425Right-handed alpha
Helix 24
AC6
B
430 458Right-handed alpha
Helix 25
AC7
B
466 471Right-handed alpha
Helix 26
AC8
C
642 651Right-handed alpha
Helix 27
AC9
D
642 651Right-handed alpha
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There are 2 sheets in PDB entry 6DGP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 339anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
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