Analysis of interatomic Contacts of Structural Units in PDB entry:
6DGU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DGU entry

There are 4 chains in PDB entry 6DGU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 26	ALA 296
A	SER 26	LYS 293
C	SER 26	LEU 294
D	LEU 28	LYS 293

There are 46 helices in PDB entry 6DGU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	38	Right-handed alpha
Helix 2	AA2	B	69	71	Right-handed 310
Helix 3	AA3	B	72	86	Right-handed alpha
Helix 4	AA4	B	106	112	Right-handed alpha
Helix 5	AA5	B	119	129	Right-handed alpha
Helix 6	AA6	B	131	143	Right-handed alpha
Helix 7	AA7	B	144	155	Right-handed alpha
Helix 8	AA8	B	165	172	Right-handed alpha
Helix 9	AA9	B	174	178	Right-handed 310
Helix 10	AB1	B	182	195	Right-handed alpha
Helix 11	AB2	B	200	213	Right-handed alpha
Helix 12	AB3	B	271	292	Right-handed alpha
Helix 13	AB4	A	27	38	Right-handed alpha
Helix 14	AB5	A	71	86	Right-handed alpha
Helix 15	AB6	A	107	112	Right-handed alpha
Helix 16	AB7	A	119	129	Right-handed alpha
Helix 17	AB8	A	131	143	Right-handed alpha
Helix 18	AB9	A	144	155	Right-handed alpha
Helix 19	AC1	A	165	172	Right-handed alpha
Helix 20	AC2	A	175	178	Right-handed 310
Helix 21	AC3	A	182	195	Right-handed alpha
Helix 22	AC4	A	200	213	Right-handed alpha
Helix 23	AC5	A	271	293	Right-handed alpha
Helix 24	AC6	C	27	38	Right-handed alpha
Helix 25	AC7	C	69	71	Right-handed 310
Helix 26	AC8	C	72	86	Right-handed alpha
Helix 27	AC9	C	107	112	Right-handed alpha
Helix 28	AD1	C	119	128	Right-handed alpha
Helix 29	AD2	C	131	143	Right-handed alpha
Helix 30	AD3	C	143	155	Right-handed alpha
Helix 31	AD4	C	165	172	Right-handed alpha
Helix 32	AD5	C	175	178	Right-handed 310
Helix 33	AD6	C	182	195	Right-handed alpha
Helix 34	AD7	C	200	213	Right-handed alpha
Helix 35	AD8	C	271	293	Right-handed alpha
Helix 36	AD9	D	29	38	Right-handed alpha
Helix 37	AE1	D	71	86	Right-handed alpha
Helix 38	AE2	D	106	111	Right-handed alpha
Helix 39	AE3	D	119	128	Right-handed alpha
Helix 40	AE4	D	131	143	Right-handed alpha
Helix 41	AE5	D	143	155	Right-handed alpha
Helix 42	AE6	D	165	172	Right-handed alpha
Helix 43	AE7	D	174	178	Right-handed 310
Helix 44	AE8	D	182	195	Right-handed alpha
Helix 45	AE9	D	200	213	Right-handed alpha
Helix 46	AF1	D	271	293	Right-handed alpha

There are 16 sheets in PDB entry 6DGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	B	258	268	anti-parallel
Strand 4	B	240	251	anti-parallel
Strand 5	B	231	237	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	B	258	268	anti-parallel
Strand 4	B	240	251	anti-parallel
Strand 5	B	240	240	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	180	181	anti-parallel
Strand 3	B	160	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	98	first strand
Strand 2	B	114	118	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	258	268	anti-parallel
Strand 4	A	240	251	anti-parallel
Strand 5	A	231	237	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	258	268	anti-parallel
Strand 4	A	240	251	anti-parallel
Strand 5	A	240	240	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	180	181	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	98	first strand
Strand 2	A	114	118	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	43	49	anti-parallel
Strand 3	C	258	268	anti-parallel
Strand 4	C	240	251	anti-parallel
Strand 5	C	231	237	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	43	49	anti-parallel
Strand 3	C	258	268	anti-parallel
Strand 4	C	240	251	anti-parallel
Strand 5	C	240	240	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	180	181	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	98	first strand
Strand 2	C	114	118	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	43	49	anti-parallel
Strand 3	D	258	268	anti-parallel
Strand 4	D	240	251	anti-parallel
Strand 5	D	231	237	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	43	49	anti-parallel
Strand 3	D	258	268	anti-parallel
Strand 4	D	240	251	anti-parallel
Strand 5	D	240	240	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	180	181	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	98	first strand
Strand 2	D	114	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DGU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DGU