Analysis of interatomic Contacts of Structural Units in PDB entry:
6DGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DGV entry

There are 2 chains in PDB entry 6DGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 439
A
 VAL 441LEU 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6DGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
40 51Right-handed alpha
Helix 4
AA4
A
62 71Right-handed alpha
Helix 5
AA5
A
83 87Right-handed 310
Helix 6
AA6
A
88 90Right-handed 310
Helix 7
AA7
A
143 152Right-handed alpha
Helix 8
AA8
A
155 159Right-handed 310
Helix 9
AA9
A
163 173Right-handed alpha
Helix 10
AB1
A
174 176Right-handed 310
Helix 11
AB2
A
183 193Right-handed alpha
Helix 12
AB3
A
203 212Right-handed alpha
Helix 13
AB4
A
238 250Right-handed alpha
Helix 14
AB5
A
251 263Right-handed alpha
Helix 15
AB6
A
286 289Right-handed 310
Helix 16
AB7
A
378 384Right-handed 310
Helix 17
AB8
A
412 414Right-handed 310
Helix 18
AB9
A
431 436Right-handed 310
Helix 19
AC1
A
441 445Right-handed 310
Helix 20
AC2
A
448 454Right-handed 310
Helix 21
AC3
A
455 460Right-handed alpha
Helix 22
AC4
A
518 522Right-handed 310
Helix 23
AC5
A
526 532Right-handed 310
Helix 24
AC6
A
538 559Right-handed alpha
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There are 3 sheets in PDB entry 6DGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
3 7parallel
Strand 3
A
57 61parallel
Strand 4
A
216 231anti-parallel
Strand 5
A
96 109anti-parallel
Strand 6
A
198 202anti-parallel
Strand 7
A
134 137parallel
Strand 8
A
178 181parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
96 109anti-parallel
Strand 3
A
216 231anti-parallel
Strand 4
A
534 536parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 285first strand
Strand 2
A
290 300anti-parallel
Strand 3
A
306 317anti-parallel
Strand 4
A
465 473anti-parallel
Strand 5
A
478 488anti-parallel
Strand 6
A
491 501anti-parallel
Strand 7
A
387 397parallel
Strand 8
A
400 411anti-parallel
Strand 9
A
416 423anti-parallel
Strand 10
A
347 357anti-parallel
Strand 11
A
329 338anti-parallel
Strand 12
A
280 285anti-parallel
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