Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DHD entry

There are 6 chains in PDB entry 6DHD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	THR 501
B	ALA 1	THR 501
C	ALA 1	THR 501
D	ALA 1	THR 501
E	ALA 1	THR 501
F	ALA 1	THR 501

There are127 helices in PDB entry 6DHD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	32	Right-handed alpha
Helix 2	AA2	A	40	53	Right-handed alpha
Helix 3	AA3	A	100	118	Right-handed alpha
Helix 4	AA4	A	132	136	Right-handed 310
Helix 5	AA5	A	137	155	Right-handed alpha
Helix 6	AA6	A	172	186	Right-handed alpha
Helix 7	AA7	A	193	197	Right-handed 310
Helix 8	AA8	A	202	206	Right-handed 310
Helix 9	AA9	A	210	228	Right-handed alpha
Helix 10	AB1	A	229	237	Right-handed alpha
Helix 11	AB2	A	253	266	Right-handed alpha
Helix 12	AB3	A	287	299	Right-handed alpha
Helix 13	AB4	A	313	317	Right-handed 310
Helix 14	AB5	A	335	339	Right-handed 310
Helix 15	AB6	A	353	363	Right-handed alpha
Helix 16	AB7	A	369	374	Right-handed alpha
Helix 17	AB8	A	375	391	Right-handed alpha
Helix 18	AB9	A	398	421	Right-handed alpha
Helix 19	AC1	A	433	438	Right-handed alpha
Helix 20	AC2	A	444	471	Right-handed alpha
Helix 21	AC3	A	476	496	Right-handed alpha
Helix 22	AC4	B	8	32	Right-handed alpha
Helix 23	AC5	B	40	53	Right-handed alpha
Helix 24	AC6	B	100	118	Right-handed alpha
Helix 25	AC7	B	132	136	Right-handed 310
Helix 26	AC8	B	137	155	Right-handed alpha
Helix 27	AC9	B	172	186	Right-handed alpha
Helix 28	AD1	B	193	198	Right-handed 310
Helix 29	AD2	B	202	206	Right-handed 310
Helix 30	AD3	B	210	228	Right-handed alpha
Helix 31	AD4	B	229	237	Right-handed alpha
Helix 32	AD5	B	253	266	Right-handed alpha
Helix 33	AD6	B	287	299	Right-handed alpha
Helix 34	AD7	B	313	317	Right-handed 310
Helix 35	AD8	B	335	339	Right-handed 310
Helix 36	AD9	B	353	363	Right-handed alpha
Helix 37	AE1	B	369	374	Right-handed alpha
Helix 38	AE2	B	375	391	Right-handed alpha
Helix 39	AE3	B	398	421	Right-handed alpha
Helix 40	AE4	B	433	438	Right-handed alpha
Helix 41	AE5	B	444	471	Right-handed alpha
Helix 42	AE6	B	476	496	Right-handed alpha
Helix 43	AE7	C	8	32	Right-handed alpha
Helix 44	AE8	C	39	53	Right-handed alpha
Helix 45	AE9	C	100	118	Right-handed alpha
Helix 46	AF1	C	132	136	Right-handed 310
Helix 47	AF2	C	137	155	Right-handed alpha
Helix 48	AF3	C	172	186	Right-handed alpha
Helix 49	AF4	C	193	197	Right-handed 310
Helix 50	AF5	C	202	206	Right-handed 310
Helix 51	AF6	C	210	228	Right-handed alpha
Helix 52	AF7	C	229	237	Right-handed alpha
Helix 53	AF8	C	253	266	Right-handed alpha
Helix 54	AF9	C	287	299	Right-handed alpha
Helix 55	AG1	C	313	317	Right-handed 310
Helix 56	AG2	C	335	339	Right-handed 310
Helix 57	AG3	C	353	363	Right-handed alpha
Helix 58	AG4	C	369	374	Right-handed alpha
Helix 59	AG5	C	375	391	Right-handed alpha
Helix 60	AG6	C	398	419	Right-handed alpha
Helix 61	AG7	C	433	438	Right-handed alpha
Helix 62	AG8	C	444	471	Right-handed alpha
Helix 63	AG9	C	476	496	Right-handed alpha
Helix 64	AH1	D	8	32	Right-handed alpha
Helix 65	AH2	D	39	53	Right-handed alpha
Helix 66	AH3	D	100	118	Right-handed alpha
Helix 67	AH4	D	132	136	Right-handed 310
Helix 68	AH5	D	137	155	Right-handed alpha
Helix 69	AH6	D	172	186	Right-handed alpha
Helix 70	AH7	D	193	198	Right-handed 310
Helix 71	AH8	D	202	206	Right-handed 310
Helix 72	AH9	D	210	228	Right-handed alpha
Helix 73	AI1	D	229	237	Right-handed alpha
Helix 74	AI2	D	253	266	Right-handed alpha
Helix 75	AI3	D	287	299	Right-handed alpha
Helix 76	AI4	D	313	317	Right-handed 310
Helix 77	AI5	D	335	339	Right-handed 310
Helix 78	AI6	D	353	363	Right-handed alpha
Helix 79	AI7	D	369	374	Right-handed alpha
Helix 80	AI8	D	375	391	Right-handed alpha
Helix 81	AI9	D	398	419	Right-handed alpha
Helix 82	AJ1	D	433	438	Right-handed alpha
Helix 83	AJ2	D	444	471	Right-handed alpha
Helix 84	AJ3	D	476	496	Right-handed alpha
Helix 85	AJ4	E	8	32	Right-handed alpha
Helix 86	AJ5	E	40	53	Right-handed alpha
Helix 87	AJ6	E	100	118	Right-handed alpha
Helix 88	AJ7	E	132	136	Right-handed 310
Helix 89	AJ8	E	137	155	Right-handed alpha
Helix 90	AJ9	E	172	186	Right-handed alpha
Helix 91	AK1	E	193	198	Right-handed 310
Helix 92	AK2	E	202	206	Right-handed 310
Helix 93	AK3	E	210	228	Right-handed alpha
Helix 94	AK4	E	229	237	Right-handed alpha
Helix 95	AK5	E	253	266	Right-handed alpha
Helix 96	AK6	E	287	299	Right-handed alpha
Helix 97	AK7	E	313	317	Right-handed 310
Helix 98	AK8	E	335	339	Right-handed 310
Helix 99	AK9	E	353	363	Right-handed alpha
Helix 100	AL1	E	369	374	Right-handed alpha
Helix 101	AL2	E	375	391	Right-handed alpha
Helix 102	AL3	E	398	421	Right-handed alpha
Helix 103	AL4	E	422	426	Right-handed 310
Helix 104	AL5	E	433	438	Right-handed alpha
Helix 105	AL6	E	444	471	Right-handed alpha
Helix 106	AL7	E	476	496	Right-handed alpha
Helix 107	AL8	F	8	32	Right-handed alpha
Helix 108	AL9	F	40	53	Right-handed alpha
Helix 109	AM1	F	100	118	Right-handed alpha
Helix 110	AM2	F	132	136	Right-handed 310
Helix 111	AM3	F	137	155	Right-handed alpha
Helix 112	AM4	F	172	186	Right-handed alpha
Helix 113	AM5	F	193	197	Right-handed 310
Helix 114	AM6	F	202	206	Right-handed 310
Helix 115	AM7	F	210	228	Right-handed alpha
Helix 116	AM8	F	229	237	Right-handed alpha
Helix 117	AM9	F	253	266	Right-handed alpha
Helix 118	AN1	F	287	299	Right-handed alpha
Helix 119	AN2	F	313	317	Right-handed 310
Helix 120	AN3	F	335	339	Right-handed 310
Helix 121	AN4	F	353	363	Right-handed alpha
Helix 122	AN5	F	369	374	Right-handed alpha
Helix 123	AN6	F	375	391	Right-handed alpha
Helix 124	AN7	F	398	421	Right-handed alpha
Helix 125	AN8	F	433	439	Right-handed alpha
Helix 126	AN9	F	444	471	Right-handed alpha
Helix 127	AO1	F	476	496	Right-handed alpha

There are 12 sheets in PDB entry 6DHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	123	129	parallel
Strand 3	A	72	81	anti-parallel
Strand 4	A	57	66	anti-parallel
Strand 5	D	57	66	anti-parallel
Strand 6	D	72	81	anti-parallel
Strand 7	D	123	129	anti-parallel
Strand 8	D	93	95	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	89	90	parallel
Strand 3	A	123	129	parallel
Strand 4	A	72	81	anti-parallel
Strand 5	A	57	66	anti-parallel
Strand 6	D	57	66	anti-parallel
Strand 7	D	72	81	anti-parallel
Strand 8	D	123	129	anti-parallel
Strand 9	D	89	90	parallel
Strand 10	D	163	164	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	279	281	anti-parallel
Strand 3	A	269	274	anti-parallel
Strand 4	A	246	250	parallel
Strand 5	A	321	324	parallel
Strand 6	A	343	345	parallel
Strand 7	A	366	368	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	123	129	parallel
Strand 3	B	72	81	anti-parallel
Strand 4	B	57	66	anti-parallel
Strand 5	E	57	66	anti-parallel
Strand 6	E	72	81	anti-parallel
Strand 7	E	123	129	anti-parallel
Strand 8	E	93	95	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	89	90	parallel
Strand 3	B	123	129	parallel
Strand 4	B	72	81	anti-parallel
Strand 5	B	57	66	anti-parallel
Strand 6	E	57	66	anti-parallel
Strand 7	E	72	81	anti-parallel
Strand 8	E	123	129	anti-parallel
Strand 9	E	89	90	parallel
Strand 10	E	163	164	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	310	first strand
Strand 2	B	279	281	anti-parallel
Strand 3	B	269	274	anti-parallel
Strand 4	B	246	250	parallel
Strand 5	B	321	324	parallel
Strand 6	B	343	345	parallel
Strand 7	B	366	368	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	123	129	parallel
Strand 3	C	72	81	anti-parallel
Strand 4	C	57	66	anti-parallel
Strand 5	F	57	66	anti-parallel
Strand 6	F	72	81	anti-parallel
Strand 7	F	123	129	anti-parallel
Strand 8	F	93	95	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	89	90	parallel
Strand 3	C	123	129	parallel
Strand 4	C	72	81	anti-parallel
Strand 5	C	57	66	anti-parallel
Strand 6	F	57	66	anti-parallel
Strand 7	F	72	81	anti-parallel
Strand 8	F	123	129	anti-parallel
Strand 9	F	89	90	parallel
Strand 10	F	163	164	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	310	first strand
Strand 2	C	279	281	anti-parallel
Strand 3	C	269	274	anti-parallel
Strand 4	C	246	250	parallel
Strand 5	C	321	324	parallel
Strand 6	C	343	345	parallel
Strand 7	C	366	368	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	310	first strand
Strand 2	D	279	281	anti-parallel
Strand 3	D	269	274	anti-parallel
Strand 4	D	246	250	parallel
Strand 5	D	321	324	parallel
Strand 6	D	343	345	parallel
Strand 7	D	366	368	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	310	first strand
Strand 2	E	279	281	anti-parallel
Strand 3	E	269	274	anti-parallel
Strand 4	E	246	250	parallel
Strand 5	E	321	324	parallel
Strand 6	E	343	345	parallel
Strand 7	E	366	368	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	308	310	first strand
Strand 2	F	279	281	anti-parallel
Strand 3	F	269	274	anti-parallel
Strand 4	F	246	250	parallel
Strand 5	F	321	324	parallel
Strand 6	F	343	345	parallel
Strand 7	F	366	368	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DHD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHD