Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DHJ entry

There are 4 chains in PDB entry 6DHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 370
B	MET 1	LEU 368
C	MET 1	VAL 367
D	MET 1	GLY 257

There are116 helices in PDB entry 6DHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	26	Right-handed alpha
Helix 2	AA2	A	30	32	Right-handed 310
Helix 3	AA3	A	50	68	Right-handed alpha
Helix 4	AA4	A	70	78	Right-handed alpha
Helix 5	AA5	A	123	127	Right-handed 310
Helix 6	AA6	A	129	148	Right-handed alpha
Helix 7	AA7	A	151	153	Right-handed 310
Helix 8	AA8	A	166	176	Right-handed alpha
Helix 9	AA9	A	184	204	Right-handed alpha
Helix 10	AB1	A	208	212	Right-handed 310
Helix 11	AB2	A	213	214	Right-handed 310
Helix 12	AB3	A	215	220	Right-handed alpha
Helix 13	AB4	A	266	277	Right-handed alpha
Helix 14	AB5	A	281	291	Right-handed 310
Helix 15	AB6	A	322	340	Right-handed alpha
Helix 16	AB7	B	17	26	Right-handed alpha
Helix 17	AB8	B	30	32	Right-handed 310
Helix 18	AB9	B	50	68	Right-handed alpha
Helix 19	AC1	B	70	78	Right-handed alpha
Helix 20	AC2	B	123	127	Right-handed 310
Helix 21	AC3	B	129	148	Right-handed alpha
Helix 22	AC4	B	151	153	Right-handed 310
Helix 23	AC5	B	166	176	Right-handed alpha
Helix 24	AC6	B	184	204	Right-handed alpha
Helix 25	AC7	B	208	212	Right-handed 310
Helix 26	AC8	B	213	214	Right-handed 310
Helix 27	AC9	B	215	220	Right-handed alpha
Helix 28	AD1	B	266	277	Right-handed alpha
Helix 29	AD2	B	281	291	Right-handed 310
Helix 30	AD3	B	322	340	Right-handed alpha
Helix 31	AD4	C	17	26	Right-handed alpha
Helix 32	AD5	C	30	32	Right-handed 310
Helix 33	AD6	C	50	68	Right-handed alpha
Helix 34	AD7	C	70	78	Right-handed alpha
Helix 35	AD8	C	123	127	Right-handed 310
Helix 36	AD9	C	129	147	Right-handed alpha
Helix 37	AE1	C	151	153	Right-handed 310
Helix 38	AE2	C	166	176	Right-handed alpha
Helix 39	AE3	C	184	204	Right-handed alpha
Helix 40	AE4	C	208	212	Right-handed 310
Helix 41	AE5	C	213	214	Right-handed 310
Helix 42	AE6	C	215	220	Right-handed alpha
Helix 43	AE7	C	266	277	Right-handed alpha
Helix 44	AE8	C	281	291	Right-handed 310
Helix 45	AE9	C	322	340	Right-handed alpha
Helix 46	AF1	D	17	26	Right-handed alpha
Helix 47	AF2	D	30	32	Right-handed 310
Helix 48	AF3	D	50	68	Right-handed alpha
Helix 49	AF4	D	70	78	Right-handed alpha
Helix 50	AF5	D	123	127	Right-handed 310
Helix 51	AF6	D	129	148	Right-handed alpha
Helix 52	AF7	D	151	153	Right-handed 310
Helix 53	AF8	D	166	176	Right-handed alpha
Helix 54	AF9	D	184	204	Right-handed alpha
Helix 55	AG1	D	208	212	Right-handed 310
Helix 56	AG2	D	213	219	Right-handed 310
Helix 57	AG3	D	266	277	Right-handed alpha
Helix 58	AG4	D	281	291	Right-handed 310
Helix 59	AG5	D	322	340	Right-handed alpha
Helix 60	AG6	E	17	26	Right-handed alpha
Helix 61	AG7	E	30	32	Right-handed 310
Helix 62	AG8	E	50	68	Right-handed alpha
Helix 63	AG9	E	70	78	Right-handed alpha
Helix 64	AH1	E	123	127	Right-handed 310
Helix 65	AH2	E	129	148	Right-handed alpha
Helix 66	AH3	E	151	153	Right-handed 310
Helix 67	AH4	E	166	176	Right-handed alpha
Helix 68	AH5	E	184	204	Right-handed alpha
Helix 69	AH6	E	208	212	Right-handed 310
Helix 70	AH7	E	213	214	Right-handed 310
Helix 71	AH8	E	215	220	Right-handed alpha
Helix 72	AH9	E	266	277	Right-handed alpha
Helix 73	AI1	E	281	291	Right-handed 310
Helix 74	AI2	E	322	340	Right-handed alpha
Helix 75	AI3	F	17	26	Right-handed alpha
Helix 76	AI4	F	30	32	Right-handed 310
Helix 77	AI5	F	50	68	Right-handed alpha
Helix 78	AI6	F	70	78	Right-handed alpha
Helix 79	AI7	F	123	127	Right-handed 310
Helix 80	AI8	F	129	148	Right-handed alpha
Helix 81	AI9	F	151	153	Right-handed 310
Helix 82	AJ1	F	166	176	Right-handed alpha
Helix 83	AJ2	F	184	204	Right-handed alpha
Helix 84	AJ3	F	208	212	Right-handed 310
Helix 85	AJ4	F	213	219	Right-handed 310
Helix 86	AJ5	F	266	277	Right-handed alpha
Helix 87	AJ6	F	281	291	Right-handed 310
Helix 88	AJ7	F	322	340	Right-handed alpha
Helix 89	AJ8	G	17	26	Right-handed alpha
Helix 90	AJ9	G	30	32	Right-handed 310
Helix 91	AK1	G	50	68	Right-handed alpha
Helix 92	AK2	G	70	78	Right-handed alpha
Helix 93	AK3	G	123	127	Right-handed 310
Helix 94	AK4	G	129	148	Right-handed alpha
Helix 95	AK5	G	151	153	Right-handed 310
Helix 96	AK6	G	166	176	Right-handed alpha
Helix 97	AK7	G	184	204	Right-handed alpha
Helix 98	AK8	G	208	212	Right-handed 310
Helix 99	AK9	G	213	218	Right-handed alpha
Helix 100	AL1	G	266	277	Right-handed alpha
Helix 101	AL2	G	281	291	Right-handed 310
Helix 102	AL3	G	322	340	Right-handed alpha
Helix 103	AL4	H	17	26	Right-handed alpha
Helix 104	AL5	H	30	32	Right-handed 310
Helix 105	AL6	H	50	68	Right-handed alpha
Helix 106	AL7	H	70	78	Right-handed alpha
Helix 107	AL8	H	123	127	Right-handed 310
Helix 108	AL9	H	129	148	Right-handed alpha
Helix 109	AM1	H	151	153	Right-handed 310
Helix 110	AM2	H	166	176	Right-handed alpha
Helix 111	AM3	H	184	204	Right-handed alpha
Helix 112	AM4	H	208	212	Right-handed 310
Helix 113	AM5	H	213	217	Right-handed 310
Helix 114	AM6	H	266	277	Right-handed alpha
Helix 115	AM7	H	281	291	Right-handed 310
Helix 116	AM8	H	322	340	Right-handed alpha

There are 32 sheets in PDB entry 6DHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	10	first strand
Strand 2	A	93	101	anti-parallel
Strand 3	A	34	41	anti-parallel
Strand 4	A	79	84	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	121	first strand
Strand 2	A	238	247	anti-parallel
Strand 3	A	155	162	anti-parallel
Strand 4	A	228	232	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	261	first strand
Strand 2	A	359	366	anti-parallel
Strand 3	A	293	300	anti-parallel
Strand 4	A	345	348	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	311	312	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	10	first strand
Strand 2	B	93	101	anti-parallel
Strand 3	B	34	41	anti-parallel
Strand 4	B	79	84	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	118	first strand
Strand 2	B	240	247	anti-parallel
Strand 3	B	155	162	anti-parallel
Strand 4	B	228	232	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	261	first strand
Strand 2	B	359	366	anti-parallel
Strand 3	B	293	300	anti-parallel
Strand 4	B	345	348	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	311	312	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	10	first strand
Strand 2	C	93	101	anti-parallel
Strand 3	C	34	41	anti-parallel
Strand 4	C	79	84	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	118	first strand
Strand 2	C	240	247	anti-parallel
Strand 3	C	155	161	anti-parallel
Strand 4	C	228	231	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	261	first strand
Strand 2	C	359	366	anti-parallel
Strand 3	C	293	300	anti-parallel
Strand 4	C	345	348	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	311	312	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	10	first strand
Strand 2	D	93	101	anti-parallel
Strand 3	D	34	41	anti-parallel
Strand 4	D	79	84	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	117	first strand
Strand 2	D	240	247	anti-parallel
Strand 3	D	155	162	anti-parallel
Strand 4	D	228	232	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	261	first strand
Strand 2	D	359	366	anti-parallel
Strand 3	D	293	300	anti-parallel
Strand 4	D	345	348	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	311	312	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	10	first strand
Strand 2	E	93	101	anti-parallel
Strand 3	E	34	41	anti-parallel
Strand 4	E	79	84	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	118	first strand
Strand 2	E	240	247	anti-parallel
Strand 3	E	155	162	anti-parallel
Strand 4	E	228	232	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	261	first strand
Strand 2	E	359	366	anti-parallel
Strand 3	E	293	300	anti-parallel
Strand 4	E	345	348	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	308	first strand
Strand 2	E	311	312	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	10	first strand
Strand 2	F	93	101	anti-parallel
Strand 3	F	34	41	anti-parallel
Strand 4	F	79	84	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	118	first strand
Strand 2	F	240	247	anti-parallel
Strand 3	F	155	161	anti-parallel
Strand 4	F	228	231	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	261	first strand
Strand 2	F	359	366	anti-parallel
Strand 3	F	293	300	anti-parallel
Strand 4	F	345	348	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	308	first strand
Strand 2	F	311	312	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	10	first strand
Strand 2	G	93	101	anti-parallel
Strand 3	G	34	41	anti-parallel
Strand 4	G	79	84	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	111	118	first strand
Strand 2	G	240	247	anti-parallel
Strand 3	G	155	162	anti-parallel
Strand 4	G	228	232	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	254	261	first strand
Strand 2	G	359	366	anti-parallel
Strand 3	G	293	300	anti-parallel
Strand 4	G	345	348	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	311	312	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	10	first strand
Strand 2	H	93	101	anti-parallel
Strand 3	H	34	41	anti-parallel
Strand 4	H	79	84	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	111	118	first strand
Strand 2	H	240	247	anti-parallel
Strand 3	H	155	162	anti-parallel
Strand 4	H	228	232	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	261	first strand
Strand 2	H	359	366	anti-parallel
Strand 3	H	293	300	anti-parallel
Strand 4	H	345	348	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	307	308	first strand
Strand 2	H	311	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHJ