Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DHM entry

There are 6 chains in PDB entry 6DHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	GLU 495
B	ALA 1	GLU 495
C	ALA 1	GLU 495
D	ALA 1	GLU 495
E	ALA 1	GLU 495
F	ALA 1	THR 501

There are127 helices in PDB entry 6DHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	32	Right-handed alpha
Helix 2	AA2	A	41	53	Right-handed alpha
Helix 3	AA3	A	100	119	Right-handed alpha
Helix 4	AA4	A	132	136	Right-handed 310
Helix 5	AA5	A	139	155	Right-handed alpha
Helix 6	AA6	A	172	186	Right-handed alpha
Helix 7	AA7	A	187	190	Right-handed 310
Helix 8	AA8	A	193	198	Right-handed 310
Helix 9	AA9	A	202	206	Right-handed 310
Helix 10	AB1	A	213	228	Right-handed alpha
Helix 11	AB2	A	229	237	Right-handed alpha
Helix 12	AB3	A	253	266	Right-handed alpha
Helix 13	AB4	A	287	299	Right-handed alpha
Helix 14	AB5	A	313	317	Right-handed 310
Helix 15	AB6	A	335	339	Right-handed 310
Helix 16	AB7	A	353	363	Right-handed alpha
Helix 17	AB8	A	369	374	Right-handed alpha
Helix 18	AB9	A	375	391	Right-handed alpha
Helix 19	AC1	A	398	421	Right-handed alpha
Helix 20	AC2	A	433	439	Right-handed alpha
Helix 21	AC3	A	444	472	Right-handed alpha
Helix 22	AC4	A	476	490	Right-handed alpha
Helix 23	AC5	B	8	32	Right-handed alpha
Helix 24	AC6	B	38	53	Right-handed alpha
Helix 25	AC7	B	100	118	Right-handed alpha
Helix 26	AC8	B	132	136	Right-handed 310
Helix 27	AC9	B	137	155	Right-handed alpha
Helix 28	AD1	B	172	186	Right-handed alpha
Helix 29	AD2	B	193	197	Right-handed 310
Helix 30	AD3	B	202	206	Right-handed 310
Helix 31	AD4	B	210	228	Right-handed alpha
Helix 32	AD5	B	229	237	Right-handed alpha
Helix 33	AD6	B	253	266	Right-handed alpha
Helix 34	AD7	B	287	299	Right-handed alpha
Helix 35	AD8	B	313	317	Right-handed 310
Helix 36	AD9	B	335	339	Right-handed 310
Helix 37	AE1	B	353	363	Right-handed alpha
Helix 38	AE2	B	369	374	Right-handed alpha
Helix 39	AE3	B	375	391	Right-handed alpha
Helix 40	AE4	B	398	421	Right-handed alpha
Helix 41	AE5	B	433	440	Right-handed alpha
Helix 42	AE6	B	444	471	Right-handed alpha
Helix 43	AE7	B	476	495	Right-handed alpha
Helix 44	AE8	C	8	32	Right-handed alpha
Helix 45	AE9	C	39	53	Right-handed alpha
Helix 46	AF1	C	100	118	Right-handed alpha
Helix 47	AF2	C	132	136	Right-handed 310
Helix 48	AF3	C	137	155	Right-handed alpha
Helix 49	AF4	C	172	186	Right-handed alpha
Helix 50	AF5	C	187	190	Right-handed 310
Helix 51	AF6	C	193	198	Right-handed 310
Helix 52	AF7	C	202	206	Right-handed 310
Helix 53	AF8	C	213	228	Right-handed alpha
Helix 54	AF9	C	229	237	Right-handed alpha
Helix 55	AG1	C	253	266	Right-handed alpha
Helix 56	AG2	C	287	299	Right-handed alpha
Helix 57	AG3	C	313	317	Right-handed 310
Helix 58	AG4	C	353	363	Right-handed alpha
Helix 59	AG5	C	369	374	Right-handed alpha
Helix 60	AG6	C	375	391	Right-handed alpha
Helix 61	AG7	C	398	421	Right-handed alpha
Helix 62	AG8	C	433	439	Right-handed alpha
Helix 63	AG9	C	444	471	Right-handed alpha
Helix 64	AH1	C	476	495	Right-handed alpha
Helix 65	AH2	D	8	32	Right-handed alpha
Helix 66	AH3	D	39	53	Right-handed alpha
Helix 67	AH4	D	100	118	Right-handed alpha
Helix 68	AH5	D	132	136	Right-handed 310
Helix 69	AH6	D	137	155	Right-handed alpha
Helix 70	AH7	D	172	185	Right-handed alpha
Helix 71	AH8	D	193	198	Right-handed 310
Helix 72	AH9	D	202	206	Right-handed 310
Helix 73	AI1	D	210	228	Right-handed alpha
Helix 74	AI2	D	229	237	Right-handed alpha
Helix 75	AI3	D	255	266	Right-handed alpha
Helix 76	AI4	D	287	299	Right-handed alpha
Helix 77	AI5	D	313	317	Right-handed 310
Helix 78	AI6	D	335	339	Right-handed 310
Helix 79	AI7	D	353	363	Right-handed alpha
Helix 80	AI8	D	369	374	Right-handed alpha
Helix 81	AI9	D	375	391	Right-handed alpha
Helix 82	AJ1	D	398	421	Right-handed alpha
Helix 83	AJ2	D	433	440	Right-handed alpha
Helix 84	AJ3	D	444	471	Right-handed alpha
Helix 85	AJ4	D	476	495	Right-handed alpha
Helix 86	AJ5	E	8	32	Right-handed alpha
Helix 87	AJ6	E	39	53	Right-handed alpha
Helix 88	AJ7	E	100	118	Right-handed alpha
Helix 89	AJ8	E	132	136	Right-handed 310
Helix 90	AJ9	E	137	155	Right-handed alpha
Helix 91	AK1	E	172	186	Right-handed alpha
Helix 92	AK2	E	193	198	Right-handed 310
Helix 93	AK3	E	202	206	Right-handed 310
Helix 94	AK4	E	213	228	Right-handed alpha
Helix 95	AK5	E	229	237	Right-handed alpha
Helix 96	AK6	E	253	267	Right-handed alpha
Helix 97	AK7	E	287	299	Right-handed alpha
Helix 98	AK8	E	313	317	Right-handed 310
Helix 99	AK9	E	335	339	Right-handed 310
Helix 100	AL1	E	353	363	Right-handed alpha
Helix 101	AL2	E	369	374	Right-handed alpha
Helix 102	AL3	E	375	391	Right-handed alpha
Helix 103	AL4	E	398	421	Right-handed alpha
Helix 104	AL5	E	433	440	Right-handed alpha
Helix 105	AL6	E	444	471	Right-handed alpha
Helix 106	AL7	E	476	495	Right-handed alpha
Helix 107	AL8	F	8	32	Right-handed alpha
Helix 108	AL9	F	39	53	Right-handed alpha
Helix 109	AM1	F	100	118	Right-handed alpha
Helix 110	AM2	F	132	136	Right-handed 310
Helix 111	AM3	F	137	155	Right-handed alpha
Helix 112	AM4	F	172	185	Right-handed alpha
Helix 113	AM5	F	193	198	Right-handed 310
Helix 114	AM6	F	202	206	Right-handed 310
Helix 115	AM7	F	210	228	Right-handed alpha
Helix 116	AM8	F	229	237	Right-handed alpha
Helix 117	AM9	F	253	266	Right-handed alpha
Helix 118	AN1	F	287	299	Right-handed alpha
Helix 119	AN2	F	313	317	Right-handed 310
Helix 120	AN3	F	335	339	Right-handed 310
Helix 121	AN4	F	353	364	Right-handed alpha
Helix 122	AN5	F	369	374	Right-handed alpha
Helix 123	AN6	F	375	391	Right-handed alpha
Helix 124	AN7	F	398	421	Right-handed alpha
Helix 125	AN8	F	433	439	Right-handed alpha
Helix 126	AN9	F	444	471	Right-handed alpha
Helix 127	AO1	F	476	496	Right-handed alpha

There are 11 sheets in PDB entry 6DHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	89	96	parallel
Strand 3	A	125	130	parallel
Strand 4	A	72	81	anti-parallel
Strand 5	A	57	66	anti-parallel
Strand 6	D	57	66	anti-parallel
Strand 7	D	72	81	anti-parallel
Strand 8	D	123	129	anti-parallel
Strand 9	D	89	95	parallel
Strand 10	D	163	167	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	269	275	anti-parallel
Strand 4	A	246	250	parallel
Strand 5	A	321	324	parallel
Strand 6	A	343	345	parallel
Strand 7	A	366	368	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	123	130	parallel
Strand 3	B	72	81	anti-parallel
Strand 4	B	57	66	anti-parallel
Strand 5	E	57	66	anti-parallel
Strand 6	E	72	81	anti-parallel
Strand 7	E	123	130	anti-parallel
Strand 8	E	93	96	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	89	90	parallel
Strand 3	B	123	130	parallel
Strand 4	B	72	81	anti-parallel
Strand 5	B	57	66	anti-parallel
Strand 6	E	57	66	anti-parallel
Strand 7	E	72	81	anti-parallel
Strand 8	E	123	130	anti-parallel
Strand 9	E	89	90	parallel
Strand 10	E	163	164	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	309	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	246	250	parallel
Strand 5	B	321	324	parallel
Strand 6	B	343	345	parallel
Strand 7	B	366	368	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	89	95	parallel
Strand 3	C	123	129	parallel
Strand 4	C	72	81	anti-parallel
Strand 5	C	57	66	anti-parallel
Strand 6	F	57	66	anti-parallel
Strand 7	F	72	81	anti-parallel
Strand 8	F	123	129	anti-parallel
Strand 9	F	93	95	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	89	95	parallel
Strand 3	C	123	129	parallel
Strand 4	C	72	81	anti-parallel
Strand 5	C	57	66	anti-parallel
Strand 6	F	57	66	anti-parallel
Strand 7	F	72	81	anti-parallel
Strand 8	F	123	129	anti-parallel
Strand 9	F	89	90	parallel
Strand 10	F	163	164	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	310	first strand
Strand 2	C	278	281	anti-parallel
Strand 3	C	269	275	anti-parallel
Strand 4	C	246	250	parallel
Strand 5	C	321	324	parallel
Strand 6	C	343	345	parallel
Strand 7	C	366	368	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	310	first strand
Strand 2	D	278	281	anti-parallel
Strand 3	D	269	275	anti-parallel
Strand 4	D	246	250	parallel
Strand 5	D	321	324	parallel
Strand 6	D	343	345	parallel
Strand 7	D	366	368	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	310	first strand
Strand 2	E	278	286	anti-parallel
Strand 3	E	269	275	anti-parallel
Strand 4	E	246	250	parallel
Strand 5	E	321	324	parallel
Strand 6	E	343	345	parallel
Strand 7	E	366	368	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	308	310	first strand
Strand 2	F	278	281	anti-parallel
Strand 3	F	269	275	anti-parallel
Strand 4	F	246	250	parallel
Strand 5	F	321	324	parallel
Strand 6	F	343	345	parallel
Strand 7	F	366	368	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHM