Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DHS entry

There are 4 chains in PDB entry 6DHS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 12	HIS 194
B	VAL 12	HIS 194
C	VAL 12	VAL 191
D	VAL 12	HIS 194

There are 25 helices in PDB entry 6DHS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	65	72	Right-handed alpha
Helix 3	AA3	A	89	95	Right-handed alpha
Helix 4	AA4	A	123	131	Right-handed alpha
Helix 5	AA5	A	161	170	Right-handed alpha
Helix 6	AA6	A	187	194	Right-handed alpha
Helix 7	AA7	B	23	31	Right-handed alpha
Helix 8	AA8	B	38	41	Right-handed 310
Helix 9	AA9	B	63	72	Right-handed alpha
Helix 10	AB1	B	89	95	Right-handed alpha
Helix 11	AB2	B	123	131	Right-handed alpha
Helix 12	AB3	B	161	169	Right-handed alpha
Helix 13	AB4	C	23	31	Right-handed alpha
Helix 14	AB5	C	38	41	Right-handed 310
Helix 15	AB6	C	63	73	Right-handed alpha
Helix 16	AB7	C	89	95	Right-handed alpha
Helix 17	AB8	C	123	131	Right-handed alpha
Helix 18	AB9	C	161	171	Right-handed alpha
Helix 19	AC1	D	23	31	Right-handed alpha
Helix 20	AC2	D	38	42	Right-handed alpha
Helix 21	AC3	D	63	72	Right-handed alpha
Helix 22	AC4	D	89	95	Right-handed alpha
Helix 23	AC5	D	123	131	Right-handed alpha
Helix 24	AC6	D	161	169	Right-handed alpha
Helix 25	AC7	D	187	192	Right-handed alpha

There are 11 sheets in PDB entry 6DHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	53	59	anti-parallel
Strand 3	A	13	16	anti-parallel
Strand 4	A	82	87	anti-parallel
Strand 5	A	75	77	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	182	185	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	179	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	53	59	anti-parallel
Strand 3	B	13	16	anti-parallel
Strand 4	B	84	87	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	81	82	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	182	186	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	53	59	anti-parallel
Strand 3	C	13	16	anti-parallel
Strand 4	C	84	87	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	154	157	anti-parallel
Strand 3	C	114	116	anti-parallel
Strand 4	C	182	183	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	57	59	anti-parallel
Strand 3	D	13	16	anti-parallel
Strand 4	D	84	87	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	182	185	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	176	first strand
Strand 2	D	179	180	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DHS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHS