Analysis of interatomic Contacts of Structural Units in PDB entry:
6DHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DHV entry

There are 2 chains in PDB entry 6DHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 4ASN 605
B
 MET 1ASN 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 6DHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
46 59Right-handed alpha
Helix 4
AA4
A
60 67Right-handed alpha
Helix 5
AA5
A
97 107Right-handed alpha
Helix 6
AA6
A
130 140Right-handed alpha
Helix 7
AA7
A
144 160Right-handed alpha
Helix 8
AA8
A
173 190Right-handed alpha
Helix 9
AA9
A
221 226Right-handed alpha
Helix 10
AB1
A
232 241Right-handed alpha
Helix 11
AB2
A
252 256Right-handed 310
Helix 12
AB3
A
282 291Right-handed alpha
Helix 13
AB4
A
306 314Right-handed alpha
Helix 14
AB5
A
346 358Right-handed alpha
Helix 15
AB6
A
361 369Right-handed alpha
Helix 16
AB7
A
384 389Right-handed alpha
Helix 17
AB8
A
395 400Right-handed alpha
Helix 18
AB9
A
404 423Right-handed alpha
Helix 19
AC1
A
433 459Right-handed alpha
Helix 20
AC2
A
460 465Right-handed 310
Helix 21
AC3
A
466 477Right-handed alpha
Helix 22
AC4
A
480 505Right-handed alpha
Helix 23
AC5
A
521 526Right-handed 310
Helix 24
AC6
A
531 539Right-handed alpha
Helix 25
AC7
A
542 549Right-handed alpha
Helix 26
AC8
A
576 591Right-handed alpha
Helix 27
AC9
B
14 18Right-handed 310
Helix 28
AD1
B
32 43Right-handed alpha
Helix 29
AD2
B
46 59Right-handed alpha
Helix 30
AD3
B
60 67Right-handed alpha
Helix 31
AD4
B
97 107Right-handed alpha
Helix 32
AD5
B
113 117Right-handed 310
Helix 33
AD6
B
130 140Right-handed alpha
Helix 34
AD7
B
144 160Right-handed alpha
Helix 35
AD8
B
173 190Right-handed alpha
Helix 36
AD9
B
221 226Right-handed alpha
Helix 37
AE1
B
232 241Right-handed alpha
Helix 38
AE2
B
252 256Right-handed 310
Helix 39
AE3
B
282 291Right-handed alpha
Helix 40
AE4
B
306 313Right-handed alpha
Helix 41
AE5
B
346 358Right-handed alpha
Helix 42
AE6
B
361 369Right-handed alpha
Helix 43
AE7
B
383 389Right-handed alpha
Helix 44
AE8
B
395 401Right-handed alpha
Helix 45
AE9
B
404 423Right-handed alpha
Helix 46
AF1
B
433 459Right-handed alpha
Helix 47
AF2
B
460 465Right-handed 310
Helix 48
AF3
B
466 479Right-handed alpha
Helix 49
AF4
B
480 505Right-handed alpha
Helix 50
AF5
B
521 525Right-handed 310
Helix 51
AF6
B
531 539Right-handed alpha
Helix 52
AF7
B
542 548Right-handed alpha
Helix 53
AF8
B
576 591Right-handed alpha
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There are 10 sheets in PDB entry 6DHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
68 69parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
529 530anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
374 376anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
201 205parallel
Strand 4
A
296 301parallel
Strand 5
A
339 344anti-parallel
Strand 6
A
316 319anti-parallel
Strand 7
A
552 559anti-parallel
Strand 8
A
565 572anti-parallel
Strand 9
A
507 511anti-parallel
Strand 10
A
391 394parallel
Strand 11
A
425 428parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
273 277anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
68 69parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
529 530anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
374 376anti-parallel
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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
244 249anti-parallel
Strand 3
B
201 205parallel
Strand 4
B
296 301parallel
Strand 5
B
339 344anti-parallel
Strand 6
B
316 319anti-parallel
Strand 7
B
552 559anti-parallel
Strand 8
B
565 572anti-parallel
Strand 9
B
507 511anti-parallel
Strand 10
B
391 394parallel
Strand 11
B
425 428parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
273 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il