Analysis of interatomic Contacts of Structural Units in PDB entry:
6DI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DI8 entry

There are 12 chains in PDB entry 6DI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	LEU 13
B	ILE 16	TYR 146
C	ALA 149	ASN 245
D	CYS 1	LEU 13
E	ILE 16	TYR 146
F	ALA 149	ASN 245
G	CYS 1	LEU 13
H	ILE 16	TYR 146
I	ALA 149	ASN 245
J	CYS 1	LEU 13
K	ILE 16	TYR 146
L	ALA 149	ASN 245

There are 16 helices in PDB entry 6DI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	55	59	Right-handed 310
Helix 2	AA2	C	164	173	Right-handed alpha
Helix 3	AA3	C	174	176	Right-handed 310
Helix 4	AA4	C	234	245	Right-handed alpha
Helix 5	AA5	E	55	59	Right-handed 310
Helix 6	AA6	F	164	173	Right-handed alpha
Helix 7	AA7	F	174	176	Right-handed 310
Helix 8	AA8	F	231	245	Right-handed alpha
Helix 9	AA9	H	55	59	Right-handed 310
Helix 10	AB1	I	164	173	Right-handed alpha
Helix 11	AB2	I	174	176	Right-handed 310
Helix 12	AB3	I	231	245	Right-handed alpha
Helix 13	AB4	K	55	59	Right-handed 310
Helix 14	AB5	L	164	173	Right-handed alpha
Helix 15	AB6	L	174	176	Right-handed 310
Helix 16	AB7	L	231	244	Right-handed alpha

There are 8 sheets in PDB entry 6DI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	C	156	163	anti-parallel
Strand 3	C	180	184	anti-parallel
Strand 4	C	225	230	anti-parallel
Strand 5	C	206	215	anti-parallel
Strand 6	C	198	203	anti-parallel
Strand 7	B	135	140	anti-parallel
Strand 8	C	156	163	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	34	first strand
Strand 2	B	40	48	anti-parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	104	108	anti-parallel
Strand 5	B	81	90	anti-parallel
Strand 6	B	65	68	anti-parallel
Strand 7	B	30	34	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	F	156	163	anti-parallel
Strand 3	F	180	184	anti-parallel
Strand 4	F	225	230	anti-parallel
Strand 5	F	206	215	anti-parallel
Strand 6	F	198	203	anti-parallel
Strand 7	E	135	140	anti-parallel
Strand 8	F	156	163	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	40	48	anti-parallel
Strand 3	E	51	54	anti-parallel
Strand 4	E	104	108	anti-parallel
Strand 5	E	81	90	anti-parallel
Strand 6	E	65	68	anti-parallel
Strand 7	E	30	34	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	I	156	163	anti-parallel
Strand 3	I	180	184	anti-parallel
Strand 4	I	225	230	anti-parallel
Strand 5	I	206	215	anti-parallel
Strand 6	I	198	203	anti-parallel
Strand 7	H	135	140	anti-parallel
Strand 8	I	156	163	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	40	48	anti-parallel
Strand 3	H	51	54	anti-parallel
Strand 4	H	104	108	anti-parallel
Strand 5	H	81	90	anti-parallel
Strand 6	H	65	68	anti-parallel
Strand 7	H	30	34	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	21	first strand
Strand 2	L	156	163	anti-parallel
Strand 3	L	180	184	anti-parallel
Strand 4	L	225	230	anti-parallel
Strand 5	L	206	215	anti-parallel
Strand 6	L	198	203	anti-parallel
Strand 7	K	135	140	anti-parallel
Strand 8	L	156	163	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	34	first strand
Strand 2	K	40	48	anti-parallel
Strand 3	K	51	54	anti-parallel
Strand 4	K	104	108	anti-parallel
Strand 5	K	81	90	anti-parallel
Strand 6	K	65	68	anti-parallel
Strand 7	K	30	34	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DI8