Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DJ3 entry

There are 2 chains in PDB entry 6DJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 618ASP 822
B
 ILE 620MET 821
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6DJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
621 636Right-handed alpha
Helix 2
AA2
A
637 640Right-handed 310
Helix 3
AA3
A
645 655Right-handed alpha
Helix 4
AA4
A
671 673Right-handed 310
Helix 5
AA5
A
715 720Right-handed alpha
Helix 6
AA6
A
809 820Right-handed alpha
Helix 7
AA7
B
621 636Right-handed alpha
Helix 8
AA8
B
637 640Right-handed 310
Helix 9
AA9
B
645 655Right-handed alpha
Helix 10
AB1
B
671 673Right-handed 310
Helix 11
AB2
B
715 720Right-handed alpha
Helix 12
AB3
B
809 820Right-handed alpha
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There are 4 sheets in PDB entry 6DJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 662first strand
Strand 2
A
802 808anti-parallel
Strand 3
A
685 691anti-parallel
Strand 4
A
712 713anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 677first strand
Strand 2
A
794 798anti-parallel
Strand 3
A
694 698anti-parallel
Strand 4
A
703 707anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
659 662first strand
Strand 2
B
802 808anti-parallel
Strand 3
B
685 691anti-parallel
Strand 4
B
712 713anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
675 677first strand
Strand 2
B
794 798anti-parallel
Strand 3
B
694 698anti-parallel
Strand 4
B
703 707anti-parallel
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