Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DJ4 entry

There is 1 chain in PDB entry 6DJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 33ALA 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6DJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 48Right-handed alpha
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
70 85Right-handed alpha
Helix 4
AA4
A
89 120Right-handed alpha
Helix 5
AA5
A
123 145Right-handed alpha
Helix 6
AA6
A
146 149Right-handed 310
Helix 7
AA7
A
157 183Right-handed alpha
Helix 8
AA8
A
185 219Right-handed alpha
Helix 9
AA9
A
222 240Right-handed alpha
Helix 10
AB1
A
240 245Right-handed alpha
Helix 11
AB2
A
246 251Right-handed 310
Helix 12
AB3
A
270 276Right-handed alpha
Helix 13
AB4
A
283 290Right-handed alpha
Helix 14
AB5
A
410 412Right-handed 310
Helix 15
AB6
A
477 479Right-handed 310
Helix 16
AB7
A
562 566Right-handed 310
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There are 8 sheets in PDB entry 6DJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
471 475parallel
Strand 3
A
597 606anti-parallel
Strand 4
A
499 502anti-parallel
Strand 5
A
486 489anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
471 475parallel
Strand 3
A
597 606anti-parallel
Strand 4
A
523 531anti-parallel
Strand 5
A
567 570anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 269first strand
Strand 2
A
446 457anti-parallel
Strand 3
A
379 390parallel
Strand 4
A
358 368anti-parallel
Strand 5
A
407 408anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
379 390anti-parallel
Strand 3
A
446 457parallel
Strand 4
A
428 438anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
314 325anti-parallel
Strand 3
A
338 339anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
314 325anti-parallel
Strand 3
A
298 309anti-parallel
Strand 4
A
350 351anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
506 515parallel
Strand 3
A
581 589anti-parallel
Strand 4
A
535 541anti-parallel
Strand 5
A
546 547anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 482first strand
Strand 2
A
506 515anti-parallel
Strand 3
A
581 589anti-parallel
Strand 4
A
535 541anti-parallel
Strand 5
A
550 551anti-parallel
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