Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DJ6 entry

There are 2 chains in PDB entry 6DJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 278
B
 THR 2HIS 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6DJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 22Right-handed alpha
Helix 2
AA2
A
41 43Right-handed 310
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
66 78Right-handed alpha
Helix 5
AA5
A
79 81Right-handed 310
Helix 6
AA6
A
95 107Right-handed alpha
Helix 7
AA7
A
119 136Right-handed alpha
Helix 8
AA8
A
139 153Right-handed alpha
Helix 9
AA9
A
163 169Right-handed alpha
Helix 10
AB1
A
170 175Right-handed 310
Helix 11
AB2
A
206 219Right-handed alpha
Helix 12
AB3
A
235 246Right-handed alpha
Helix 13
AB4
A
247 249Right-handed 310
Helix 14
AB5
A
259 267Right-handed alpha
Helix 15
AB6
B
15 22Right-handed alpha
Helix 16
AB7
B
41 43Right-handed 310
Helix 17
AB8
B
47 56Right-handed alpha
Helix 18
AB9
B
66 78Right-handed alpha
Helix 19
AC1
B
79 81Right-handed 310
Helix 20
AC2
B
95 106Right-handed alpha
Helix 21
AC3
B
119 136Right-handed alpha
Helix 22
AC4
B
139 153Right-handed alpha
Helix 23
AC5
B
163 169Right-handed alpha
Helix 24
AC6
B
170 175Right-handed 310
Helix 25
AC7
B
206 220Right-handed alpha
Helix 26
AC8
B
235 246Right-handed alpha
Helix 27
AC9
B
247 249Right-handed 310
Helix 28
AD1
B
259 267Right-handed alpha
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There are 6 sheets in PDB entry 6DJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
5 9parallel
Strand 3
A
84 88parallel
Strand 4
A
111 115parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
61 63anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 202first strand
Strand 2
A
186 192anti-parallel
Strand 3
A
154 160anti-parallel
Strand 4
A
271 277anti-parallel
Strand 5
A
224 231anti-parallel
Strand 6
A
254 257parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 27first strand
Strand 2
B
5 9parallel
Strand 3
B
84 88parallel
Strand 4
B
111 115parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
30 33anti-parallel
Strand 3
B
61 63anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 202first strand
Strand 2
B
186 192anti-parallel
Strand 3
B
154 160anti-parallel
Strand 4
B
271 277anti-parallel
Strand 5
B
224 231anti-parallel
Strand 6
B
254 257parallel
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