Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DJ8 entry

There are 10 chains in PDB entry 6DJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLY 385
B
 ASN 4GLY 385
C
 LEU 5LEU 5
C
 LEU 7LEU 7
C
 PRO 9PRO 9
C
 GLY 11GLY 11
D
 LEU 5LEU 5
D
 LEU 7LEU 7
D
 PRO 9PRO 9
D
 GLY 11GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6DJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 4Right-handed 310
Helix 2
AA2
A
11 22Right-handed alpha
Helix 3
AA3
A
23 25Right-handed 310
Helix 4
AA4
A
32 34Right-handed 310
Helix 5
AA5
A
75 85Right-handed alpha
Helix 6
AA6
A
126 133Right-handed alpha
Helix 7
AA7
A
149 160Right-handed alpha
Helix 8
AA8
A
161 163Right-handed 310
Helix 9
AA9
A
214 224Right-handed alpha
Helix 10
AB1
A
259 264Right-handed 310
Helix 11
AB2
A
276 287Right-handed alpha
Helix 12
AB3
A
288 290Right-handed 310
Helix 13
AB4
A
340 348Right-handed alpha
Helix 14
AB5
B
11 22Right-handed alpha
Helix 15
AB6
B
23 25Right-handed 310
Helix 16
AB7
B
32 34Right-handed 310
Helix 17
AB8
B
75 85Right-handed alpha
Helix 18
AB9
B
125 127Right-handed 310
Helix 19
AC1
B
128 133Right-handed alpha
Helix 20
AC2
B
149 160Right-handed alpha
Helix 21
AC3
B
161 163Right-handed 310
Helix 22
AC4
B
214 224Right-handed alpha
Helix 23
AC5
B
259 264Right-handed 310
Helix 24
AC6
B
276 287Right-handed alpha
Helix 25
AC7
B
288 290Right-handed 310
Helix 26
AC8
B
340 348Right-handed alpha
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There are 6 sheets in PDB entry 6DJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
6 10anti-parallel
Strand 3
A
90 96anti-parallel
Strand 4
A
101 106anti-parallel
Strand 5
A
118 122anti-parallel
Strand 6
B
317 323anti-parallel
Strand 7
B
304 310anti-parallel
Strand 8
B
295 300anti-parallel
Strand 9
B
334 339anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
45 51anti-parallel
Strand 4
A
56 62anti-parallel
Strand 5
A
246 251anti-parallel
Strand 6
A
238 243anti-parallel
Strand 7
A
229 234anti-parallel
Strand 8
A
143 148anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
184 190anti-parallel
Strand 4
A
194 203anti-parallel
Strand 5
A
375 379anti-parallel
Strand 6
A
365 368anti-parallel
Strand 7
A
354 359anti-parallel
Strand 8
A
270 275anti-parallel
Strand 9
A
327 330anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
295 300anti-parallel
Strand 3
A
304 310anti-parallel
Strand 4
A
317 323anti-parallel
Strand 5
B
118 122anti-parallel
Strand 6
B
101 106anti-parallel
Strand 7
B
90 96anti-parallel
Strand 8
B
6 10anti-parallel
Strand 9
B
64 65anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
56 62anti-parallel
Strand 5
B
246 251anti-parallel
Strand 6
B
238 243anti-parallel
Strand 7
B
229 234anti-parallel
Strand 8
B
143 148anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 213first strand
Strand 2
B
174 179anti-parallel
Strand 3
B
184 190anti-parallel
Strand 4
B
194 203anti-parallel
Strand 5
B
375 379anti-parallel
Strand 6
B
365 368anti-parallel
Strand 7
B
354 359anti-parallel
Strand 8
B
270 275anti-parallel
Strand 9
B
327 330anti-parallel
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