Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DJB entry

There are 6 chains in PDB entry 6DJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	LEU 802
B	PRO 15	LEU 802
E	PRO 15	LEU 802
F	PRO 15	LEU 802
C	PRO 15	LEU 802
D	PRO 15	LEU 802

There are186 helices in PDB entry 6DJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed 310
Helix 2	AA2	A	24	50	Right-handed alpha
Helix 3	AA3	A	102	117	Right-handed alpha
Helix 4	AA4	A	119	141	Right-handed alpha
Helix 5	AA5	A	149	165	Right-handed alpha
Helix 6	AA6	A	166	173	Right-handed alpha
Helix 7	AA7	A	235	256	Right-handed alpha
Helix 8	AA8	A	258	285	Right-handed alpha
Helix 9	AA9	A	299	304	Right-handed alpha
Helix 10	AB1	A	314	345	Right-handed alpha
Helix 11	AB2	A	353	358	Right-handed alpha
Helix 12	AB3	A	370	383	Right-handed alpha
Helix 13	AB4	A	383	394	Right-handed alpha
Helix 14	AB5	A	395	411	Right-handed alpha
Helix 15	AB6	A	412	419	Right-handed alpha
Helix 16	AB7	A	439	445	Right-handed 310
Helix 17	AB8	A	464	468	Right-handed 310
Helix 18	AB9	A	487	494	Right-handed alpha
Helix 19	AC1	A	528	541	Right-handed alpha
Helix 20	AC2	A	559	566	Right-handed alpha
Helix 21	AC3	A	567	569	Right-handed 310
Helix 22	AC4	A	586	591	Right-handed alpha
Helix 23	AC5	A	634	638	Right-handed 310
Helix 24	AC6	A	656	661	Right-handed 310
Helix 25	AC7	A	703	707	Right-handed 310
Helix 26	AC8	A	724	729	Right-handed 310
Helix 27	AC9	A	747	753	Right-handed 310
Helix 28	AD1	A	770	775	Right-handed 310
Helix 29	AD2	A	794	802	Right-handed alpha
Helix 30	AD3	B	15	20	Right-handed 310
Helix 31	AD4	B	25	49	Right-handed alpha
Helix 32	AD5	B	102	116	Right-handed alpha
Helix 33	AD6	B	119	124	Right-handed alpha
Helix 34	AD7	B	124	140	Right-handed alpha
Helix 35	AD8	B	146	164	Right-handed alpha
Helix 36	AD9	B	167	173	Right-handed alpha
Helix 37	AE1	B	220	227	Right-handed alpha
Helix 38	AE2	B	235	255	Right-handed alpha
Helix 39	AE3	B	258	285	Right-handed alpha
Helix 40	AE4	B	299	304	Right-handed alpha
Helix 41	AE5	B	313	346	Right-handed alpha
Helix 42	AE6	B	353	360	Right-handed alpha
Helix 43	AE7	B	370	381	Right-handed alpha
Helix 44	AE8	B	383	394	Right-handed alpha
Helix 45	AE9	B	395	411	Right-handed alpha
Helix 46	AF1	B	412	417	Right-handed alpha
Helix 47	AF2	B	418	420	Right-handed 310
Helix 48	AF3	B	440	445	Right-handed 310
Helix 49	AF4	B	487	492	Right-handed alpha
Helix 50	AF5	B	511	515	Right-handed 310
Helix 51	AF6	B	528	540	Right-handed alpha
Helix 52	AF7	B	559	566	Right-handed alpha
Helix 53	AF8	B	583	591	Right-handed alpha
Helix 54	AF9	B	607	613	Right-handed 310
Helix 55	AG1	B	634	638	Right-handed 310
Helix 56	AG2	B	657	661	Right-handed 310
Helix 57	AG3	B	680	684	Right-handed 310
Helix 58	AG4	B	701	706	Right-handed 310
Helix 59	AG5	B	724	729	Right-handed 310
Helix 60	AG6	B	747	754	Right-handed 310
Helix 61	AG7	B	772	776	Right-handed 310
Helix 62	AG8	B	794	802	Right-handed alpha
Helix 63	AG9	E	15	20	Right-handed 310
Helix 64	AH1	E	24	50	Right-handed alpha
Helix 65	AH2	E	102	117	Right-handed alpha
Helix 66	AH3	E	119	141	Right-handed alpha
Helix 67	AH4	E	149	165	Right-handed alpha
Helix 68	AH5	E	166	173	Right-handed alpha
Helix 69	AH6	E	235	256	Right-handed alpha
Helix 70	AH7	E	258	285	Right-handed alpha
Helix 71	AH8	E	299	304	Right-handed alpha
Helix 72	AH9	E	314	345	Right-handed alpha
Helix 73	AI1	E	353	358	Right-handed alpha
Helix 74	AI2	E	370	383	Right-handed alpha
Helix 75	AI3	E	383	394	Right-handed alpha
Helix 76	AI4	E	395	411	Right-handed alpha
Helix 77	AI5	E	412	419	Right-handed alpha
Helix 78	AI6	E	439	445	Right-handed 310
Helix 79	AI7	E	464	468	Right-handed 310
Helix 80	AI8	E	487	494	Right-handed alpha
Helix 81	AI9	E	528	541	Right-handed alpha
Helix 82	AJ1	E	559	566	Right-handed alpha
Helix 83	AJ2	E	567	569	Right-handed 310
Helix 84	AJ3	E	586	591	Right-handed alpha
Helix 85	AJ4	E	634	638	Right-handed 310
Helix 86	AJ5	E	656	661	Right-handed 310
Helix 87	AJ6	E	703	707	Right-handed 310
Helix 88	AJ7	E	724	729	Right-handed 310
Helix 89	AJ8	E	747	753	Right-handed 310
Helix 90	AJ9	E	770	775	Right-handed 310
Helix 91	AK1	E	794	802	Right-handed alpha
Helix 92	AK2	F	15	20	Right-handed 310
Helix 93	AK3	F	25	49	Right-handed alpha
Helix 94	AK4	F	102	116	Right-handed alpha
Helix 95	AK5	F	119	124	Right-handed alpha
Helix 96	AK6	F	124	140	Right-handed alpha
Helix 97	AK7	F	146	164	Right-handed alpha
Helix 98	AK8	F	167	173	Right-handed alpha
Helix 99	AK9	F	220	227	Right-handed alpha
Helix 100	AL1	F	235	255	Right-handed alpha
Helix 101	AL2	F	258	285	Right-handed alpha
Helix 102	AL3	F	299	304	Right-handed alpha
Helix 103	AL4	F	313	346	Right-handed alpha
Helix 104	AL5	F	353	360	Right-handed alpha
Helix 105	AL6	F	370	381	Right-handed alpha
Helix 106	AL7	F	383	394	Right-handed alpha
Helix 107	AL8	F	395	411	Right-handed alpha
Helix 108	AL9	F	412	417	Right-handed alpha
Helix 109	AM1	F	418	420	Right-handed 310
Helix 110	AM2	F	440	445	Right-handed 310
Helix 111	AM3	F	487	492	Right-handed alpha
Helix 112	AM4	F	511	515	Right-handed 310
Helix 113	AM5	F	528	540	Right-handed alpha
Helix 114	AM6	F	559	566	Right-handed alpha
Helix 115	AM7	F	583	591	Right-handed alpha
Helix 116	AM8	F	607	613	Right-handed 310
Helix 117	AM9	F	634	638	Right-handed 310
Helix 118	AN1	F	657	661	Right-handed 310
Helix 119	AN2	F	680	684	Right-handed 310
Helix 120	AN3	F	701	706	Right-handed 310
Helix 121	AN4	F	724	729	Right-handed 310
Helix 122	AN5	F	747	754	Right-handed 310
Helix 123	AN6	F	772	776	Right-handed 310
Helix 124	AN7	F	794	802	Right-handed alpha
Helix 125	AN8	C	15	20	Right-handed 310
Helix 126	AN9	C	24	50	Right-handed alpha
Helix 127	AO1	C	102	117	Right-handed alpha
Helix 128	AO2	C	119	141	Right-handed alpha
Helix 129	AO3	C	149	165	Right-handed alpha
Helix 130	AO4	C	166	173	Right-handed alpha
Helix 131	AO5	C	235	256	Right-handed alpha
Helix 132	AO6	C	258	285	Right-handed alpha
Helix 133	AO7	C	299	304	Right-handed alpha
Helix 134	AO8	C	314	345	Right-handed alpha
Helix 135	AO9	C	353	358	Right-handed alpha
Helix 136	AP1	C	370	383	Right-handed alpha
Helix 137	AP2	C	383	394	Right-handed alpha
Helix 138	AP3	C	395	411	Right-handed alpha
Helix 139	AP4	C	412	419	Right-handed alpha
Helix 140	AP5	C	439	445	Right-handed 310
Helix 141	AP6	C	464	468	Right-handed 310
Helix 142	AP7	C	487	494	Right-handed alpha
Helix 143	AP8	C	528	541	Right-handed alpha
Helix 144	AP9	C	559	566	Right-handed alpha
Helix 145	AQ1	C	567	569	Right-handed 310
Helix 146	AQ2	C	586	591	Right-handed alpha
Helix 147	AQ3	C	634	638	Right-handed 310
Helix 148	AQ4	C	656	661	Right-handed 310
Helix 149	AQ5	C	703	707	Right-handed 310
Helix 150	AQ6	C	724	729	Right-handed 310
Helix 151	AQ7	C	747	753	Right-handed 310
Helix 152	AQ8	C	770	775	Right-handed 310
Helix 153	AQ9	C	794	802	Right-handed alpha
Helix 154	AR1	D	15	20	Right-handed 310
Helix 155	AR2	D	25	49	Right-handed alpha
Helix 156	AR3	D	102	116	Right-handed alpha
Helix 157	AR4	D	119	124	Right-handed alpha
Helix 158	AR5	D	124	140	Right-handed alpha
Helix 159	AR6	D	146	164	Right-handed alpha
Helix 160	AR7	D	167	173	Right-handed alpha
Helix 161	AR8	D	220	227	Right-handed alpha
Helix 162	AR9	D	235	255	Right-handed alpha
Helix 163	AS1	D	258	285	Right-handed alpha
Helix 164	AS2	D	299	304	Right-handed alpha
Helix 165	AS3	D	313	346	Right-handed alpha
Helix 166	AS4	D	353	360	Right-handed alpha
Helix 167	AS5	D	370	381	Right-handed alpha
Helix 168	AS6	D	383	394	Right-handed alpha
Helix 169	AS7	D	395	411	Right-handed alpha
Helix 170	AS8	D	412	417	Right-handed alpha
Helix 171	AS9	D	418	420	Right-handed 310
Helix 172	AT1	D	440	445	Right-handed 310
Helix 173	AT2	D	487	492	Right-handed alpha
Helix 174	AT3	D	511	515	Right-handed 310
Helix 175	AT4	D	528	540	Right-handed alpha
Helix 176	AT5	D	559	566	Right-handed alpha
Helix 177	AT6	D	583	591	Right-handed alpha
Helix 178	AT7	D	607	613	Right-handed 310
Helix 179	AT8	D	634	638	Right-handed 310
Helix 180	AT9	D	657	661	Right-handed 310
Helix 181	AU1	D	680	684	Right-handed 310
Helix 182	AU2	D	701	706	Right-handed 310
Helix 183	AU3	D	724	729	Right-handed 310
Helix 184	AU4	D	747	754	Right-handed 310
Helix 185	AU5	D	772	776	Right-handed 310
Helix 186	AU6	D	794	802	Right-handed alpha

There are 15 sheets in PDB entry 6DJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	308	311	anti-parallel
Strand 3	A	292	295	anti-parallel

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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	429	432	anti-parallel
Strand 3	A	450	454	parallel
Strand 4	A	473	477	parallel
Strand 5	A	497	501	parallel
Strand 6	A	520	524	parallel
Strand 7	A	548	552	parallel
Strand 8	A	571	575	parallel
Strand 9	A	595	599	parallel
Strand 10	A	619	622	parallel
Strand 11	A	642	645	parallel
Strand 12	A	664	670	parallel
Strand 13	A	689	693	parallel
Strand 14	A	712	716	parallel
Strand 15	A	735	739	parallel
Strand 16	A	758	762	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	308	311	anti-parallel
Strand 3	B	292	295	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	367	369	anti-parallel

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There are 16 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	450	454	parallel
Strand 3	B	473	477	parallel
Strand 4	B	497	501	parallel
Strand 5	B	520	524	parallel
Strand 6	B	548	552	parallel
Strand 7	B	571	574	parallel
Strand 8	B	595	599	parallel
Strand 9	B	619	622	parallel
Strand 10	B	642	645	parallel
Strand 11	B	664	670	parallel
Strand 12	B	689	693	parallel
Strand 13	B	712	716	parallel
Strand 14	B	735	739	parallel
Strand 15	B	758	762	parallel
Strand 16	B	784	785	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	308	311	anti-parallel
Strand 3	E	292	295	anti-parallel

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There are 16 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	420	421	first strand
Strand 2	E	429	432	anti-parallel
Strand 3	E	450	454	parallel
Strand 4	E	473	477	parallel
Strand 5	E	497	501	parallel
Strand 6	E	520	524	parallel
Strand 7	E	548	552	parallel
Strand 8	E	571	575	parallel
Strand 9	E	595	599	parallel
Strand 10	E	619	622	parallel
Strand 11	E	642	645	parallel
Strand 12	E	664	670	parallel
Strand 13	E	689	693	parallel
Strand 14	E	712	716	parallel
Strand 15	E	735	739	parallel
Strand 16	E	758	762	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	308	311	anti-parallel
Strand 3	F	292	295	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	350	352	first strand
Strand 2	F	367	369	anti-parallel

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There are 16 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	431	432	first strand
Strand 2	F	450	454	parallel
Strand 3	F	473	477	parallel
Strand 4	F	497	501	parallel
Strand 5	F	520	524	parallel
Strand 6	F	548	552	parallel
Strand 7	F	571	574	parallel
Strand 8	F	595	599	parallel
Strand 9	F	619	622	parallel
Strand 10	F	642	645	parallel
Strand 11	F	664	670	parallel
Strand 12	F	689	693	parallel
Strand 13	F	712	716	parallel
Strand 14	F	735	739	parallel
Strand 15	F	758	762	parallel
Strand 16	F	784	785	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	308	311	anti-parallel
Strand 3	C	292	295	anti-parallel

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There are 16 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	421	first strand
Strand 2	C	429	432	anti-parallel
Strand 3	C	450	454	parallel
Strand 4	C	473	477	parallel
Strand 5	C	497	501	parallel
Strand 6	C	520	524	parallel
Strand 7	C	548	552	parallel
Strand 8	C	571	575	parallel
Strand 9	C	595	599	parallel
Strand 10	C	619	622	parallel
Strand 11	C	642	645	parallel
Strand 12	C	664	670	parallel
Strand 13	C	689	693	parallel
Strand 14	C	712	716	parallel
Strand 15	C	735	739	parallel
Strand 16	C	758	762	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	308	311	anti-parallel
Strand 3	D	292	295	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	367	369	anti-parallel

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There are 16 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	432	first strand
Strand 2	D	450	454	parallel
Strand 3	D	473	477	parallel
Strand 4	D	497	501	parallel
Strand 5	D	520	524	parallel
Strand 6	D	548	552	parallel
Strand 7	D	571	574	parallel
Strand 8	D	595	599	parallel
Strand 9	D	619	622	parallel
Strand 10	D	642	645	parallel
Strand 11	D	664	670	parallel
Strand 12	D	689	693	parallel
Strand 13	D	712	716	parallel
Strand 14	D	735	739	parallel
Strand 15	D	758	762	parallel
Strand 16	D	784	785	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJB