Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DJL entry

There are 6 chains in PDB entry 6DJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	ASP 183
B	VAL 41	ARG 261
C	VAL 41	SER 264
D	VAL 41	SER 264
E	GLU 39	SER 264
F	ASP 6	THR 167

There are 46 helices in PDB entry 6DJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	22	Right-handed 310
Helix 2	AA2	A	23	29	Right-handed alpha
Helix 3	AA3	A	76	82	Right-handed alpha
Helix 4	AA4	A	95	113	Right-handed alpha
Helix 5	AA5	A	135	146	Right-handed alpha
Helix 6	AA6	A	158	181	Right-handed alpha
Helix 7	AA7	B	43	92	Right-handed alpha
Helix 8	AA8	B	95	97	Right-handed 310
Helix 9	AA9	B	98	146	Right-handed alpha
Helix 10	AB1	B	147	151	Right-handed 310
Helix 11	AB2	B	152	201	Right-handed alpha
Helix 12	AB3	B	201	261	Right-handed alpha
Helix 13	AB4	C	44	92	Right-handed alpha
Helix 14	AB5	C	93	98	Right-handed alpha
Helix 15	AB6	C	98	134	Right-handed alpha
Helix 16	AB7	C	137	147	Right-handed alpha
Helix 17	AB8	C	152	156	Right-handed 310
Helix 18	AB9	C	162	201	Right-handed alpha
Helix 19	AC1	C	201	264	Right-handed alpha
Helix 20	AC2	D	44	90	Right-handed alpha
Helix 21	AC3	D	98	138	Right-handed alpha
Helix 22	AC4	D	138	146	Right-handed alpha
Helix 23	AC5	D	150	159	Right-handed alpha
Helix 24	AC6	D	161	201	Right-handed alpha
Helix 25	AC7	D	201	263	Right-handed alpha
Helix 26	AC8	E	43	92	Right-handed alpha
Helix 27	AC9	E	93	146	Right-handed alpha
Helix 28	AD1	E	147	151	Right-handed 310
Helix 29	AD2	E	152	201	Right-handed alpha
Helix 30	AD3	E	201	264	Right-handed alpha
Helix 31	AD4	F	23	28	Right-handed alpha
Helix 32	AD5	F	73	81	Right-handed alpha
Helix 33	AD6	F	95	113	Right-handed alpha
Helix 34	AD7	F	135	146	Right-handed alpha
Helix 35	AD8	F	158	181	Right-handed alpha
Helix 36	AD9	G	23	29	Right-handed alpha
Helix 37	AE1	G	70	74	Right-handed 310
Helix 38	AE2	G	76	82	Right-handed alpha
Helix 39	AE3	G	95	113	Right-handed alpha
Helix 40	AE4	G	135	146	Right-handed alpha
Helix 41	AE5	G	159	181	Right-handed alpha
Helix 42	AE6	H	70	74	Right-handed 310
Helix 43	AE7	H	76	82	Right-handed alpha
Helix 44	AE8	H	95	113	Right-handed alpha
Helix 45	AE9	H	135	146	Right-handed alpha
Helix 46	AF1	H	158	181	Right-handed alpha

There are 4 sheets in PDB entry 6DJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	58	66	anti-parallel
Strand 3	A	10	18	parallel
Strand 4	A	86	91	parallel
Strand 5	A	118	123	parallel
Strand 6	A	149	152	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	48	55	anti-parallel
Strand 3	F	58	65	anti-parallel
Strand 4	F	10	17	parallel
Strand 5	F	86	92	parallel
Strand 6	F	118	124	parallel
Strand 7	F	149	153	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	47	55	anti-parallel
Strand 3	G	58	66	anti-parallel
Strand 4	G	10	18	parallel
Strand 5	G	86	91	parallel
Strand 6	G	118	123	parallel
Strand 7	G	149	152	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	46	55	anti-parallel
Strand 3	H	58	67	anti-parallel
Strand 4	H	10	17	parallel
Strand 5	H	86	92	parallel
Strand 6	H	118	124	parallel
Strand 7	H	149	153	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJL