Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DJQ entry

There are 3 chains in PDB entry 6DJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11GLN 696
B
 LEU 10SER 695
C
 GLN 12ILE 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6DJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 33Right-handed alpha
Helix 2
AA2
A
55 65Right-handed alpha
Helix 3
AA3
A
127 144Right-handed alpha
Helix 4
AA4
A
185 199Right-handed alpha
Helix 5
AA5
A
214 217Right-handed 310
Helix 6
AA6
A
218 228Right-handed alpha
Helix 7
AA7
A
240 244Right-handed 310
Helix 8
AA8
A
250 255Right-handed alpha
Helix 9
AA9
A
272 278Right-handed alpha
Helix 10
AB1
A
281 296Right-handed alpha
Helix 11
AB2
A
299 306Right-handed 310
Helix 12
AB3
A
307 325Right-handed alpha
Helix 13
AB4
A
326 345Right-handed alpha
Helix 14
AB5
A
676 696Right-handed alpha
Helix 15
AB6
B
18 30Right-handed alpha
Helix 16
AB7
B
55 65Right-handed alpha
Helix 17
AB8
B
127 144Right-handed alpha
Helix 18
AB9
B
185 199Right-handed alpha
Helix 19
AC1
B
214 217Right-handed 310
Helix 20
AC2
B
218 228Right-handed alpha
Helix 21
AC3
B
240 244Right-handed 310
Helix 22
AC4
B
250 255Right-handed alpha
Helix 23
AC5
B
272 278Right-handed alpha
Helix 24
AC6
B
281 296Right-handed alpha
Helix 25
AC7
B
299 306Right-handed 310
Helix 26
AC8
B
307 325Right-handed alpha
Helix 27
AC9
B
326 348Right-handed alpha
Helix 28
AD1
B
672 695Right-handed alpha
Helix 29
AD2
C
18 36Right-handed alpha
Helix 30
AD3
C
55 65Right-handed alpha
Helix 31
AD4
C
127 144Right-handed alpha
Helix 32
AD5
C
185 199Right-handed alpha
Helix 33
AD6
C
214 217Right-handed 310
Helix 34
AD7
C
218 228Right-handed alpha
Helix 35
AD8
C
240 244Right-handed 310
Helix 36
AD9
C
250 255Right-handed alpha
Helix 37
AE1
C
272 278Right-handed alpha
Helix 38
AE2
C
281 296Right-handed alpha
Helix 39
AE3
C
299 306Right-handed 310
Helix 40
AE4
C
307 325Right-handed alpha
Helix 41
AE5
C
326 348Right-handed alpha
Helix 42
AE6
C
672 697Right-handed alpha
Helix 43
AE7
D
18 33Right-handed alpha
Helix 44
AE8
D
55 65Right-handed alpha
Helix 45
AE9
D
127 144Right-handed alpha
Helix 46
AF1
D
185 199Right-handed alpha
Helix 47
AF2
D
214 217Right-handed 310
Helix 48
AF3
D
218 228Right-handed alpha
Helix 49
AF4
D
240 244Right-handed 310
Helix 50
AF5
D
250 255Right-handed alpha
Helix 51
AF6
D
272 278Right-handed alpha
Helix 52
AF7
D
281 296Right-handed alpha
Helix 53
AF8
D
299 306Right-handed 310
Helix 54
AF9
D
307 325Right-handed alpha
Helix 55
AG1
D
326 341Right-handed alpha
Helix 56
AG2
D
680 691Right-handed alpha
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There are 4 sheets in PDB entry 6DJQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
81 87parallel
Strand 4
A
167 170anti-parallel
Strand 5
A
45 50parallel
Strand 6
A
203 210parallel
Strand 7
A
234 239parallel
Strand 8
A
265 267parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
154 160anti-parallel
Strand 3
B
81 87parallel
Strand 4
B
166 170anti-parallel
Strand 5
B
45 50parallel
Strand 6
B
203 210parallel
Strand 7
B
234 239parallel
Strand 8
B
265 267parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 117first strand
Strand 2
C
154 160anti-parallel
Strand 3
C
81 87parallel
Strand 4
C
166 170anti-parallel
Strand 5
C
45 50parallel
Strand 6
C
203 210parallel
Strand 7
C
234 239parallel
Strand 8
C
265 267parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 117first strand
Strand 2
D
154 160anti-parallel
Strand 3
D
81 87parallel
Strand 4
D
166 170anti-parallel
Strand 5
D
45 50parallel
Strand 6
D
203 210parallel
Strand 7
D
234 239parallel
Strand 8
D
265 267parallel
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