Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DJT entry

There are 2 chains in PDB entry 6DJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0TYR 40
A
 SER 42LEU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6DJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
26 36Right-handed alpha
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
48 50Right-handed 310
Helix 5
AA5
A
91 109Right-handed alpha
Helix 6
AA6
A
110 112Right-handed 310
Helix 7
AA7
A
113 118Right-handed alpha
Helix 8
AA8
A
118 126Right-handed alpha
Helix 9
AA9
A
138 142Right-handed 310
Helix 10
AB1
A
144 155Right-handed alpha
Helix 11
AB2
A
167 174Right-handed alpha
Helix 12
AB3
A
187 196Right-handed alpha
Helix 13
AB4
A
198 212Right-handed alpha
Helix 14
AB5
A
213 215Right-handed 310
Helix 15
AB6
A
231 234Right-handed 310
Helix 16
AB7
A
235 243Right-handed alpha
Helix 17
AB8
A
263 267Right-handed 310
Helix 18
AB9
A
269 283Right-handed alpha
Helix 19
AC1
A
293 295Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6DJT.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
21 23anti-parallel
Strand 3
A
52 56anti-parallel
Strand 4
A
130 133parallel
Strand 5
A
158 163parallel
Strand 6
A
178 182parallel
Strand 7
A
218 224parallel
Strand 8
A
246 251parallel
Strand 9
A
297 302anti-parallel
Strand 10
A
286 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il