Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DJV entry

There are 3 chains in PDB entry 6DJV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 159	LEU 845
B	GLN 159	LEU 845
C	GLN 159	VAL 411

There are167 helices in PDB entry 6DJV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	159	165	Right-handed alpha
Helix 2	AA2	A	167	174	Right-handed alpha
Helix 3	AA3	A	183	195	Right-handed alpha
Helix 4	AA4	A	212	226	Right-handed alpha
Helix 5	AA5	A	229	233	Right-handed 310
Helix 6	AA6	A	253	268	Right-handed alpha
Helix 7	AA7	A	300	305	Right-handed alpha
Helix 8	AA8	A	317	324	Right-handed alpha
Helix 9	AA9	A	329	334	Right-handed 310
Helix 10	AB1	A	343	352	Right-handed alpha
Helix 11	AB2	A	354	362	Right-handed alpha
Helix 12	AB3	A	367	381	Right-handed alpha
Helix 13	AB4	A	391	407	Right-handed alpha
Helix 14	AB5	A	411	431	Right-handed alpha
Helix 15	AB6	A	444	469	Right-handed alpha
Helix 16	AB7	A	534	545	Right-handed alpha
Helix 17	AB8	A	557	562	Right-handed alpha
Helix 18	AB9	A	563	568	Right-handed alpha
Helix 19	AC1	A	569	571	Right-handed 310
Helix 20	AC2	A	575	592	Right-handed alpha
Helix 21	AC3	A	614	621	Right-handed alpha
Helix 22	AC4	A	627	629	Right-handed 310
Helix 23	AC5	A	642	649	Right-handed 310
Helix 24	AC6	A	664	668	Right-handed 310
Helix 25	AC7	A	687	691	Right-handed 310
Helix 26	AC8	A	728	739	Right-handed alpha
Helix 27	AC9	A	740	745	Right-handed alpha
Helix 28	AD1	A	758	776	Right-handed alpha
Helix 29	AD2	A	786	796	Right-handed alpha
Helix 30	AD3	A	804	824	Right-handed alpha
Helix 31	AD4	B	160	164	Right-handed alpha
Helix 32	AD5	B	168	173	Right-handed alpha
Helix 33	AD6	B	183	195	Right-handed alpha
Helix 34	AD7	B	212	226	Right-handed alpha
Helix 35	AD8	B	229	233	Right-handed 310
Helix 36	AD9	B	243	247	Right-handed 310
Helix 37	AE1	B	254	269	Right-handed alpha
Helix 38	AE2	B	280	283	Right-handed 310
Helix 39	AE3	B	300	307	Right-handed alpha
Helix 40	AE4	B	317	324	Right-handed alpha
Helix 41	AE5	B	325	328	Right-handed 310
Helix 42	AE6	B	329	334	Right-handed alpha
Helix 43	AE7	B	343	354	Right-handed alpha
Helix 44	AE8	B	354	362	Right-handed alpha
Helix 45	AE9	B	368	378	Right-handed alpha
Helix 46	AF1	B	391	407	Right-handed alpha
Helix 47	AF2	B	411	431	Right-handed alpha
Helix 48	AF3	B	444	469	Right-handed alpha
Helix 49	AF4	B	534	545	Right-handed alpha
Helix 50	AF5	B	557	563	Right-handed alpha
Helix 51	AF6	B	567	571	Right-handed 310
Helix 52	AF7	B	575	591	Right-handed alpha
Helix 53	AF8	B	644	648	Right-handed 310
Helix 54	AF9	B	664	669	Right-handed alpha
Helix 55	AG1	B	688	696	Right-handed alpha
Helix 56	AG2	B	728	734	Right-handed alpha
Helix 57	AG3	B	734	739	Right-handed alpha
Helix 58	AG4	B	759	776	Right-handed alpha
Helix 59	AG5	B	786	797	Right-handed alpha
Helix 60	AG6	B	806	815	Right-handed alpha
Helix 61	AG7	B	815	825	Right-handed alpha
Helix 62	AG8	C	160	165	Right-handed alpha
Helix 63	AG9	C	169	174	Right-handed alpha
Helix 64	AH1	C	183	194	Right-handed alpha
Helix 65	AH2	C	212	226	Right-handed alpha
Helix 66	AH3	C	253	268	Right-handed alpha
Helix 67	AH4	C	280	283	Right-handed 310
Helix 68	AH5	C	300	305	Right-handed alpha
Helix 69	AH6	C	319	324	Right-handed alpha
Helix 70	AH7	C	325	328	Right-handed 310
Helix 71	AH8	C	343	352	Right-handed alpha
Helix 72	AH9	C	357	362	Right-handed alpha
Helix 73	AI1	C	367	378	Right-handed alpha
Helix 74	AI2	C	391	407	Right-handed alpha
Helix 75	AI3	C	411	431	Right-handed alpha
Helix 76	AI4	C	444	469	Right-handed alpha
Helix 77	AI5	C	534	544	Right-handed alpha
Helix 78	AI6	C	557	563	Right-handed alpha
Helix 79	AI7	C	567	571	Right-handed 310
Helix 80	AI8	C	575	591	Right-handed alpha
Helix 81	AI9	C	612	620	Right-handed alpha
Helix 82	AJ1	C	642	648	Right-handed 310
Helix 83	AJ2	C	664	668	Right-handed 310
Helix 84	AJ3	C	731	739	Right-handed alpha
Helix 85	AJ4	C	740	745	Right-handed alpha
Helix 86	AJ5	C	757	776	Right-handed alpha
Helix 87	AJ6	C	777	780	Right-handed 310
Helix 88	AJ7	C	786	796	Right-handed alpha
Helix 89	AJ8	C	806	815	Right-handed alpha
Helix 90	AJ9	C	815	824	Right-handed alpha
Helix 91	AK1	D	168	172	Right-handed alpha
Helix 92	AK2	D	183	195	Right-handed alpha
Helix 93	AK3	D	213	225	Right-handed alpha
Helix 94	AK4	D	229	233	Right-handed 310
Helix 95	AK5	D	241	245	Right-handed 310
Helix 96	AK6	D	254	269	Right-handed alpha
Helix 97	AK7	D	280	284	Right-handed 310
Helix 98	AK8	D	300	305	Right-handed alpha
Helix 99	AK9	D	316	321	Right-handed alpha
Helix 100	AL1	D	343	354	Right-handed alpha
Helix 101	AL2	D	357	362	Right-handed alpha
Helix 102	AL3	D	367	382	Right-handed alpha
Helix 103	AL4	D	391	407	Right-handed alpha
Helix 104	AL5	D	536	545	Right-handed alpha
Helix 105	AL6	D	557	563	Right-handed alpha
Helix 106	AL7	D	564	569	Right-handed alpha
Helix 107	AL8	D	579	591	Right-handed alpha
Helix 108	AL9	D	612	624	Right-handed alpha
Helix 109	AM1	D	641	649	Right-handed 310
Helix 110	AM2	D	662	670	Right-handed alpha
Helix 111	AM3	D	687	690	Right-handed 310
Helix 112	AM4	D	691	696	Right-handed alpha
Helix 113	AM5	D	731	739	Right-handed alpha
Helix 114	AM6	D	760	776	Right-handed alpha
Helix 115	AM7	D	786	796	Right-handed alpha
Helix 116	AM8	D	806	825	Right-handed alpha
Helix 117	AM9	E	170	174	Right-handed 310
Helix 118	AN1	E	185	195	Right-handed alpha
Helix 119	AN2	E	211	226	Right-handed alpha
Helix 120	AN3	E	229	233	Right-handed 310
Helix 121	AN4	E	256	268	Right-handed alpha
Helix 122	AN5	E	280	283	Right-handed 310
Helix 123	AN6	E	300	305	Right-handed alpha
Helix 124	AN7	E	317	321	Right-handed alpha
Helix 125	AN8	E	343	354	Right-handed alpha
Helix 126	AN9	E	367	382	Right-handed alpha
Helix 127	AO1	E	386	391	Right-handed alpha
Helix 128	AO2	E	400	407	Right-handed 310
Helix 129	AO3	E	534	547	Right-handed alpha
Helix 130	AO4	E	575	586	Right-handed alpha
Helix 131	AO5	E	587	592	Right-handed 310
Helix 132	AO6	E	614	625	Right-handed alpha
Helix 133	AO7	E	644	649	Right-handed 310
Helix 134	AO8	E	664	668	Right-handed 310
Helix 135	AO9	E	680	684	Right-handed 310
Helix 136	AP1	E	688	696	Right-handed alpha
Helix 137	AP2	E	728	739	Right-handed alpha
Helix 138	AP3	E	741	747	Right-handed alpha
Helix 139	AP4	E	760	774	Right-handed alpha
Helix 140	AP5	E	775	778	Right-handed 310
Helix 141	AP6	E	786	796	Right-handed alpha
Helix 142	AP7	E	806	826	Right-handed alpha
Helix 143	AP8	F	168	174	Right-handed alpha
Helix 144	AP9	F	184	195	Right-handed alpha
Helix 145	AQ1	F	212	226	Right-handed alpha
Helix 146	AQ2	F	229	233	Right-handed 310
Helix 147	AQ3	F	253	267	Right-handed alpha
Helix 148	AQ4	F	280	283	Right-handed 310
Helix 149	AQ5	F	300	305	Right-handed alpha
Helix 150	AQ6	F	323	326	Right-handed 310
Helix 151	AQ7	F	327	332	Right-handed alpha
Helix 152	AQ8	F	343	354	Right-handed alpha
Helix 153	AQ9	F	356	362	Right-handed alpha
Helix 154	AR1	F	367	378	Right-handed alpha
Helix 155	AR2	F	389	406	Right-handed alpha
Helix 156	AR3	F	534	543	Right-handed alpha
Helix 157	AR4	F	557	563	Right-handed alpha
Helix 158	AR5	F	567	571	Right-handed 310
Helix 159	AR6	F	575	591	Right-handed alpha
Helix 160	AR7	F	616	625	Right-handed alpha
Helix 161	AR8	F	641	648	Right-handed 310
Helix 162	AR9	F	663	671	Right-handed alpha
Helix 163	AS1	F	687	694	Right-handed alpha
Helix 164	AS2	F	728	737	Right-handed alpha
Helix 165	AS3	F	760	776	Right-handed alpha
Helix 166	AS4	F	786	796	Right-handed alpha
Helix 167	AS5	F	804	824	Right-handed alpha

There are 29 sheets in PDB entry 6DJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	203	205	parallel
Strand 3	A	337	338	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	275	276	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	635	first strand
Strand 2	A	675	679	parallel
Strand 3	A	715	719	parallel
Strand 4	A	602	606	parallel
Strand 5	A	751	752	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	701	first strand
Strand 2	A	709	710	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	A	834	838	parallel
Strand 3	A	843	844	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	273	278	parallel
Strand 3	B	310	316	parallel
Strand 4	B	202	206	parallel
Strand 5	B	335	338	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	532	533	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	635	first strand
Strand 2	B	675	679	parallel
Strand 3	B	715	718	parallel
Strand 4	B	601	606	parallel
Strand 5	B	751	752	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	701	first strand
Strand 2	B	709	710	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	785	first strand
Strand 2	B	833	836	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	312	316	parallel
Strand 3	C	202	206	parallel
Strand 4	C	335	338	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	532	533	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	635	first strand
Strand 2	C	675	679	parallel
Strand 3	C	715	719	parallel
Strand 4	C	601	606	parallel
Strand 5	C	751	752	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	702	first strand
Strand 2	C	708	710	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	783	785	first strand
Strand 2	C	834	839	parallel
Strand 3	C	842	844	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	238	239	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	337	339	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	278	first strand
Strand 2	D	312	314	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	635	first strand
Strand 2	D	675	679	parallel
Strand 3	D	715	719	parallel
Strand 4	D	604	606	parallel
Strand 5	D	751	752	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	700	701	first strand
Strand 2	D	709	710	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	783	784	first strand
Strand 2	D	834	835	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	237	first strand
Strand 2	E	273	278	parallel
Strand 3	E	311	316	parallel
Strand 4	E	202	206	parallel
Strand 5	E	335	338	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	631	635	first strand
Strand 2	E	675	679	parallel
Strand 3	E	715	718	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	701	702	first strand
Strand 2	E	708	709	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	238	first strand
Strand 2	F	273	278	parallel
Strand 3	F	312	316	parallel
Strand 4	F	203	206	parallel
Strand 5	F	336	338	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	632	635	first strand
Strand 2	F	675	679	parallel
Strand 3	F	715	719	parallel
Strand 4	F	601	606	parallel
Strand 5	F	751	752	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	700	702	first strand
Strand 2	F	708	710	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	783	784	first strand
Strand 2	F	834	835	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	837	839	first strand
Strand 2	F	842	844	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DJV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJV