Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DJX entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 6DJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 25GLN 93
A
 ILE 95PRO 410
B
 MET 1GLU 64
B
 THR 66ARG 74
C
 SER 0PRO 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6DJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 64Right-handed alpha
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
223 228Right-handed alpha
Helix 4
AA4
A
296 308Right-handed alpha
Helix 5
AA5
A
335 342Right-handed 310
Helix 6
AA6
A
343 362Right-handed alpha
Helix 7
AA7
B
22 35Right-handed alpha
Helix 8
AA8
B
56 60Right-handed 310
Helix 9
AA9
C
3 17Right-handed alpha
Helix 10
AB1
C
43 47Right-handed 310
Helix 11
AB2
C
60 64Right-handed 310
Helix 12
AB3
C
100 114Right-handed alpha
Helix 13
AB4
C
122 132Right-handed alpha
Helix 14
AB5
C
133 147Right-handed alpha
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There are 9 sheets in PDB entry 6DJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
94 100parallel
Strand 4
A
70 74anti-parallel
Strand 5
A
77 78anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
259 260anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 191first strand
Strand 2
A
241 246anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
282 285anti-parallel
Strand 3
A
293 295anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
319 321anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
B
66 72parallel
Strand 3
B
2 7parallel
Strand 4
B
12 16anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
B
66 72parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
48 49anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
34 39anti-parallel
Strand 3
C
49 56anti-parallel
Strand 4
C
67 70anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
34 39anti-parallel
Strand 3
C
49 56anti-parallel
Strand 4
C
149 150anti-parallel
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