Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DJY entry

There are 4 chains in PDB entry 6DJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 281
B	GLY 82	GLU 1202
C	ALA 162	GLU 1202
D	MET 1	GLY 1056

There are111 helices in PDB entry 6DJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	64	Right-handed alpha
Helix 2	AA2	A	72	77	Right-handed 310
Helix 3	AA3	A	103	118	Right-handed alpha
Helix 4	AA4	A	119	123	Right-handed 310
Helix 5	AA5	A	127	142	Right-handed alpha
Helix 6	AA6	A	162	172	Right-handed alpha
Helix 7	AA7	A	175	188	Right-handed alpha
Helix 8	AA8	A	191	203	Right-handed alpha
Helix 9	AA9	A	203	221	Right-handed alpha
Helix 10	AB1	A	260	275	Right-handed alpha
Helix 11	AB2	A	276	278	Right-handed 310
Helix 12	AB3	B	205	212	Right-handed alpha
Helix 13	AB4	B	212	218	Right-handed alpha
Helix 14	AB5	B	232	237	Right-handed alpha
Helix 15	AB6	B	253	269	Right-handed alpha
Helix 16	AB7	B	302	307	Right-handed alpha
Helix 17	AB8	B	313	325	Right-handed alpha
Helix 18	AB9	B	354	369	Right-handed alpha
Helix 19	AC1	B	374	385	Right-handed alpha
Helix 20	AC2	B	410	419	Right-handed alpha
Helix 21	AC3	B	422	438	Right-handed alpha
Helix 22	AC4	B	448	453	Right-handed alpha
Helix 23	AC5	B	463	472	Right-handed alpha
Helix 24	AC6	B	479	484	Right-handed alpha
Helix 25	AC7	B	485	488	Right-handed 310
Helix 26	AC8	B	508	523	Right-handed alpha
Helix 27	AC9	B	523	544	Right-handed alpha
Helix 28	AD1	B	547	557	Right-handed alpha
Helix 29	AD2	B	608	617	Right-handed alpha
Helix 30	AD3	B	625	630	Right-handed alpha
Helix 31	AD4	B	657	682	Right-handed alpha
Helix 32	AD5	B	688	721	Right-handed alpha
Helix 33	AD6	B	769	777	Right-handed alpha
Helix 34	AD7	B	782	786	Right-handed 310
Helix 35	AD8	B	808	832	Right-handed alpha
Helix 36	AD9	B	844	851	Right-handed alpha
Helix 37	AE1	B	859	874	Right-handed alpha
Helix 38	AE2	B	930	945	Right-handed alpha
Helix 39	AE3	B	1027	1038	Right-handed alpha
Helix 40	AE4	B	1059	1063	Right-handed 310
Helix 41	AE5	B	1068	1074	Right-handed alpha
Helix 42	AE6	B	1139	1144	Right-handed 310
Helix 43	AE7	C	206	211	Right-handed alpha
Helix 44	AE8	C	211	216	Right-handed alpha
Helix 45	AE9	C	233	237	Right-handed 310
Helix 46	AF1	C	253	269	Right-handed alpha
Helix 47	AF2	C	302	307	Right-handed 310
Helix 48	AF3	C	313	325	Right-handed alpha
Helix 49	AF4	C	354	369	Right-handed alpha
Helix 50	AF5	C	374	385	Right-handed alpha
Helix 51	AF6	C	409	421	Right-handed alpha
Helix 52	AF7	C	423	437	Right-handed alpha
Helix 53	AF8	C	438	440	Right-handed 310
Helix 54	AF9	C	448	457	Right-handed alpha
Helix 55	AG1	C	467	472	Right-handed alpha
Helix 56	AG2	C	476	489	Right-handed alpha
Helix 57	AG3	C	508	523	Right-handed alpha
Helix 58	AG4	C	523	528	Right-handed alpha
Helix 59	AG5	C	530	546	Right-handed alpha
Helix 60	AG6	C	546	557	Right-handed alpha
Helix 61	AG7	C	600	606	Right-handed alpha
Helix 62	AG8	C	609	614	Right-handed alpha
Helix 63	AG9	C	625	630	Right-handed alpha
Helix 64	AH1	C	658	678	Right-handed alpha
Helix 65	AH2	C	688	720	Right-handed alpha
Helix 66	AH3	C	769	776	Right-handed alpha
Helix 67	AH4	C	782	787	Right-handed alpha
Helix 68	AH5	C	808	833	Right-handed alpha
Helix 69	AH6	C	845	850	Right-handed alpha
Helix 70	AH7	C	859	872	Right-handed alpha
Helix 71	AH8	C	881	890	Right-handed alpha
Helix 72	AH9	C	930	945	Right-handed alpha
Helix 73	AI1	C	1027	1038	Right-handed alpha
Helix 74	AI2	C	1059	1063	Right-handed 310
Helix 75	AI3	C	1139	1144	Right-handed 310
Helix 76	AI4	D	11	20	Right-handed 310
Helix 77	AI5	D	55	61	Right-handed alpha
Helix 78	AI6	D	68	81	Right-handed alpha
Helix 79	AI7	D	99	107	Right-handed alpha
Helix 80	AI8	D	111	119	Right-handed alpha
Helix 81	AI9	D	132	140	Right-handed alpha
Helix 82	AJ1	D	168	178	Right-handed alpha
Helix 83	AJ2	D	187	193	Right-handed 310
Helix 84	AJ3	D	200	223	Right-handed alpha
Helix 85	AJ4	D	242	252	Right-handed alpha
Helix 86	AJ5	D	253	255	Right-handed 310
Helix 87	AJ6	D	268	279	Right-handed alpha
Helix 88	AJ7	D	280	285	Right-handed alpha
Helix 89	AJ8	D	294	306	Right-handed alpha
Helix 90	AJ9	D	314	318	Right-handed 310
Helix 91	AK1	D	392	397	Right-handed 310
Helix 92	AK2	D	412	424	Right-handed alpha
Helix 93	AK3	D	428	435	Right-handed alpha
Helix 94	AK4	D	440	457	Right-handed alpha
Helix 95	AK5	D	466	472	Right-handed alpha
Helix 96	AK6	D	500	517	Right-handed alpha
Helix 97	AK7	D	537	548	Right-handed alpha
Helix 98	AK8	D	573	577	Right-handed 310
Helix 99	AK9	D	597	618	Right-handed alpha
Helix 100	AL1	D	630	642	Right-handed alpha
Helix 101	AL2	D	685	690	Right-handed alpha
Helix 102	AL3	D	728	739	Right-handed alpha
Helix 103	AL4	D	767	775	Right-handed alpha
Helix 104	AL5	D	805	809	Right-handed 310
Helix 105	AL6	D	829	842	Right-handed alpha
Helix 106	AL7	D	865	871	Right-handed 310
Helix 107	AL8	D	931	944	Right-handed alpha
Helix 108	AL9	D	961	965	Right-handed 310
Helix 109	AM1	D	999	1010	Right-handed alpha
Helix 110	AM2	D	1019	1030	Right-handed alpha
Helix 111	AM3	D	1041	1048	Right-handed alpha

There are 40 sheets in PDB entry 6DJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	A	151	157	anti-parallel
Strand 3	A	235	239	anti-parallel
Strand 4	A	224	228	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	90	92	anti-parallel
Strand 3	A	84	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	875	878	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	101	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	1186	1194	anti-parallel
Strand 4	B	390	394	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	272	274	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	190	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	1119	1122	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	347	349	anti-parallel
Strand 3	B	1175	1177	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	400	401	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	778	780	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	568	571	first strand
Strand 2	B	560	563	anti-parallel
Strand 3	B	592	593	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	624	first strand
Strand 2	B	640	641	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	752	first strand
Strand 2	B	742	745	anti-parallel
Strand 3	B	901	906	anti-parallel
Strand 4	B	909	910	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	978	981	first strand
Strand 2	B	1014	1018	parallel
Strand 3	B	1042	1056	parallel
Strand 4	B	1081	1085	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	978	981	first strand
Strand 2	B	1014	1018	parallel
Strand 3	B	1042	1056	parallel
Strand 4	B	952	957	anti-parallel
Strand 5	B	1110	1111	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	987	991	first strand
Strand 2	B	996	1001	anti-parallel
Strand 3	B	1006	1007	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	170	first strand
Strand 2	C	1186	1194	anti-parallel
Strand 3	C	390	395	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	272	274	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	190	first strand
Strand 2	C	222	229	anti-parallel
Strand 3	C	1119	1122	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	294	296	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	336	first strand
Strand 2	C	347	350	anti-parallel
Strand 3	C	1174	1177	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	443	first strand
Strand 2	C	779	780	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	765	766	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	561	563	first strand
Strand 2	C	568	570	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	742	746	anti-parallel
Strand 3	C	901	906	anti-parallel
Strand 4	C	909	910	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	978	980	first strand
Strand 2	C	1014	1017	parallel
Strand 3	C	1042	1057	parallel
Strand 4	C	1081	1086	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	978	980	first strand
Strand 2	C	1014	1017	parallel
Strand 3	C	1042	1057	parallel
Strand 4	C	952	960	anti-parallel
Strand 5	C	1107	1111	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	987	992	first strand
Strand 2	C	995	1000	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1148	1149	first strand
Strand 2	C	1153	1155	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	27	first strand
Strand 2	D	37	39	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	159	163	anti-parallel
Strand 3	D	194	196	anti-parallel
Strand 4	D	182	183	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	312	first strand
Strand 2	D	327	330	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	349	first strand
Strand 2	D	744	746	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	360	first strand
Strand 2	D	798	800	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	371	first strand
Strand 2	D	706	707	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	402	first strand
Strand 2	D	649	655	anti-parallel
Strand 3	D	665	670	anti-parallel
Strand 4	D	625	626	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	482	first strand
Strand 2	D	486	487	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	554	556	first strand
Strand 2	D	529	531	parallel
Strand 3	D	584	585	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	717	722	first strand
Strand 2	D	760	765	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	889	891	first strand
Strand 2	D	896	900	anti-parallel
Strand 3	D	879	883	parallel
Strand 4	D	856	860	parallel
Strand 5	D	913	916	parallel
Strand 6	D	951	957	parallel
Strand 7	D	1049	1054	anti-parallel
Strand 8	D	1013	1016	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	977	978	first strand
Strand 2	D	985	988	anti-parallel
Strand 3	D	994	996	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DJY