Analysis of interatomic Contacts of Structural Units in PDB entry:
6DK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DK2 entry

There are 2 chains in PDB entry 6DK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 36LYS 560
B
 VAL 36LYS 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6DK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 52Right-handed alpha
Helix 2
AA2
A
52 62Right-handed alpha
Helix 3
AA3
A
62 67Right-handed alpha
Helix 4
AA4
A
73 80Right-handed alpha
Helix 5
AA5
A
81 83Right-handed 310
Helix 6
AA6
A
86 91Right-handed alpha
Helix 7
AA7
A
91 98Right-handed alpha
Helix 8
AA8
A
100 113Right-handed alpha
Helix 9
AA9
A
115 117Right-handed 310
Helix 10
AB1
A
118 141Right-handed alpha
Helix 11
AB2
A
163 180Right-handed alpha
Helix 12
AB3
A
198 217Right-handed alpha
Helix 13
AB4
A
221 236Right-handed alpha
Helix 14
AB5
A
240 244Right-handed 310
Helix 15
AB6
A
259 263Right-handed 310
Helix 16
AB7
A
267 275Right-handed alpha
Helix 17
AB8
A
286 295Right-handed alpha
Helix 18
AB9
A
300 304Right-handed alpha
Helix 19
AC1
A
324 335Right-handed alpha
Helix 20
AC2
A
363 376Right-handed alpha
Helix 21
AC3
A
384 389Right-handed 310
Helix 22
AC4
A
394 397Right-handed 310
Helix 23
AC5
A
407 421Right-handed alpha
Helix 24
AC6
A
427 448Right-handed alpha
Helix 25
AC7
A
453 462Right-handed alpha
Helix 26
AC8
A
471 487Right-handed alpha
Helix 27
AC9
A
490 502Right-handed alpha
Helix 28
AD1
A
528 532Right-handed 310
Helix 29
AD2
A
535 547Right-handed alpha
Helix 30
AD3
B
37 52Right-handed alpha
Helix 31
AD4
B
52 62Right-handed alpha
Helix 32
AD5
B
62 67Right-handed alpha
Helix 33
AD6
B
73 80Right-handed alpha
Helix 34
AD7
B
81 83Right-handed 310
Helix 35
AD8
B
86 91Right-handed alpha
Helix 36
AD9
B
91 98Right-handed alpha
Helix 37
AE1
B
100 113Right-handed alpha
Helix 38
AE2
B
115 117Right-handed 310
Helix 39
AE3
B
118 141Right-handed alpha
Helix 40
AE4
B
163 180Right-handed alpha
Helix 41
AE5
B
198 217Right-handed alpha
Helix 42
AE6
B
221 236Right-handed alpha
Helix 43
AE7
B
240 244Right-handed 310
Helix 44
AE8
B
257 263Right-handed alpha
Helix 45
AE9
B
267 275Right-handed alpha
Helix 46
AF1
B
286 295Right-handed alpha
Helix 47
AF2
B
300 304Right-handed alpha
Helix 48
AF3
B
324 335Right-handed alpha
Helix 49
AF4
B
363 376Right-handed alpha
Helix 50
AF5
B
384 389Right-handed 310
Helix 51
AF6
B
394 397Right-handed 310
Helix 52
AF7
B
407 422Right-handed alpha
Helix 53
AF8
B
427 448Right-handed alpha
Helix 54
AF9
B
453 462Right-handed alpha
Helix 55
AG1
B
471 487Right-handed alpha
Helix 56
AG2
B
490 502Right-handed alpha
Helix 57
AG3
B
530 535Right-handed alpha
Helix 58
AG4
B
535 547Right-handed alpha
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There are 6 sheets in PDB entry 6DK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
403 406anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
391 392anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
322 323anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 247first strand
Strand 2
B
403 406anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
391 392anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
322 323anti-parallel
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