Analysis of interatomic Contacts of Structural Units in PDB entry:
6DK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DK3 entry

There is 1 chain in PDB entry 6DK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 42HIS 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6DK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 53Right-handed alpha
Helix 2
AA2
A
53 70Right-handed alpha
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
90 95Right-handed 310
Helix 5
AA5
A
111 127Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
205 217Right-handed alpha
Helix 8
AA8
A
233 245Right-handed alpha
Helix 9
AA9
A
255 261Right-handed alpha
Helix 10
AB1
A
266 270Right-handed 310
Helix 11
AB2
A
311 320Right-handed alpha
Helix 12
AB3
A
328 343Right-handed alpha
Helix 13
AB4
A
344 368Right-handed alpha
Helix 14
AB5
A
374 376Right-handed 310
Helix 15
AB6
A
387 390Right-handed 310
Helix 16
AB7
A
392 403Right-handed alpha
Helix 17
AB8
A
428 434Right-handed alpha
Helix 18
AB9
A
437 461Right-handed alpha
Helix 19
AC1
A
464 475Right-handed alpha
Helix 20
AC2
A
475 494Right-handed alpha
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There are 4 sheets in PDB entry 6DK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
405 406parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
273 277anti-parallel
Strand 4
A
247 251parallel
Strand 5
A
220 223parallel
Strand 6
A
161 162parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
306 308anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
423 427anti-parallel
Strand 4
A
408 410anti-parallel
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