Analysis of interatomic Contacts of Structural Units in PDB entry:
6DK8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DK8 entry

There are 8 chains in PDB entry 6DK8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 418	GLN 642
B	ALA 416	GLN 642
C	ALA 416	GLN 642
D	ALA 416	GLN 642
E	ALA 416	GLN 643
F	ALA 416	GLN 642
G	GLU 417	PRO 641
H	ALA 416	GLN 642

There are 58 helices in PDB entry 6DK8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	426	441	Right-handed alpha
Helix 2	AA2	A	446	479	Right-handed alpha
Helix 3	AA3	A	490	508	Right-handed alpha
Helix 4	AA4	A	527	546	Right-handed alpha
Helix 5	AA5	A	578	588	Right-handed alpha
Helix 6	AA6	A	600	618	Right-handed alpha
Helix 7	AA7	B	417	422	Right-handed alpha
Helix 8	AA8	B	422	441	Right-handed alpha
Helix 9	AA9	B	446	479	Right-handed alpha
Helix 10	AB1	B	490	503	Right-handed alpha
Helix 11	AB2	B	527	546	Right-handed alpha
Helix 12	AB3	B	578	587	Right-handed alpha
Helix 13	AB4	B	592	597	Right-handed 310
Helix 14	AB5	B	604	617	Right-handed alpha
Helix 15	AB6	C	426	441	Right-handed alpha
Helix 16	AB7	C	446	478	Right-handed alpha
Helix 17	AB8	C	490	508	Right-handed alpha
Helix 18	AB9	C	527	546	Right-handed alpha
Helix 19	AC1	C	578	588	Right-handed alpha
Helix 20	AC2	C	597	602	Right-handed 310
Helix 21	AC3	C	604	617	Right-handed alpha
Helix 22	AC4	D	417	422	Right-handed alpha
Helix 23	AC5	D	422	441	Right-handed alpha
Helix 24	AC6	D	446	459	Right-handed alpha
Helix 25	AC7	D	459	479	Right-handed alpha
Helix 26	AC8	D	490	507	Right-handed alpha
Helix 27	AC9	D	527	546	Right-handed alpha
Helix 28	AD1	D	578	587	Right-handed alpha
Helix 29	AD2	D	604	617	Right-handed alpha
Helix 30	AD3	E	423	441	Right-handed alpha
Helix 31	AD4	E	446	479	Right-handed alpha
Helix 32	AD5	E	490	509	Right-handed alpha
Helix 33	AD6	E	527	546	Right-handed alpha
Helix 34	AD7	E	578	588	Right-handed alpha
Helix 35	AD8	E	597	599	Right-handed 310
Helix 36	AD9	E	600	617	Right-handed alpha
Helix 37	AE1	F	417	422	Right-handed alpha
Helix 38	AE2	F	422	441	Right-handed alpha
Helix 39	AE3	F	446	478	Right-handed alpha
Helix 40	AE4	F	490	506	Right-handed alpha
Helix 41	AE5	F	527	545	Right-handed alpha
Helix 42	AE6	F	578	587	Right-handed alpha
Helix 43	AE7	F	591	596	Right-handed 310
Helix 44	AE8	F	605	617	Right-handed alpha
Helix 45	AE9	G	423	441	Right-handed alpha
Helix 46	AF1	G	446	478	Right-handed alpha
Helix 47	AF2	G	490	509	Right-handed alpha
Helix 48	AF3	G	527	546	Right-handed alpha
Helix 49	AF4	G	580	588	Right-handed alpha
Helix 50	AF5	G	597	617	Right-handed alpha
Helix 51	AF6	H	417	422	Right-handed alpha
Helix 52	AF7	H	422	441	Right-handed alpha
Helix 53	AF8	H	448	478	Right-handed alpha
Helix 54	AF9	H	490	503	Right-handed alpha
Helix 55	AG1	H	504	507	Right-handed 310
Helix 56	AG2	H	527	546	Right-handed alpha
Helix 57	AG3	H	578	587	Right-handed alpha
Helix 58	AG4	H	604	617	Right-handed alpha

There are 16 sheets in PDB entry 6DK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	550	558	parallel
Strand 3	A	565	572	anti-parallel
Strand 4	A	631	637	anti-parallel
Strand 5	A	621	625	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	489	first strand
Strand 2	B	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	516	first strand
Strand 2	B	551	558	parallel
Strand 3	B	565	571	anti-parallel
Strand 4	B	632	636	anti-parallel
Strand 5	B	620	624	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	489	first strand
Strand 2	C	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	516	first strand
Strand 2	C	550	558	parallel
Strand 3	C	565	572	anti-parallel
Strand 4	C	631	635	anti-parallel
Strand 5	C	621	625	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	489	first strand
Strand 2	D	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	514	first strand
Strand 2	D	550	558	parallel
Strand 3	D	565	572	anti-parallel
Strand 4	D	631	637	anti-parallel
Strand 5	D	620	623	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	486	489	first strand
Strand 2	E	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	511	516	first strand
Strand 2	E	550	558	parallel
Strand 3	E	565	571	anti-parallel
Strand 4	E	632	638	anti-parallel
Strand 5	E	620	623	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	486	489	first strand
Strand 2	F	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	512	513	first strand
Strand 2	F	551	558	parallel
Strand 3	F	565	572	anti-parallel
Strand 4	F	631	638	anti-parallel
Strand 5	F	621	624	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	486	489	first strand
Strand 2	G	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	511	516	first strand
Strand 2	G	550	558	parallel
Strand 3	G	565	571	anti-parallel
Strand 4	G	632	638	anti-parallel
Strand 5	G	620	624	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	486	489	first strand
Strand 2	H	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	512	516	first strand
Strand 2	H	551	558	parallel
Strand 3	H	565	572	anti-parallel
Strand 4	H	631	638	anti-parallel
Strand 5	H	620	623	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DK8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DK8