Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DKE entry

There is 1 chain in PDB entry 6DKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0ILE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6DKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
44 55Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
78 80Right-handed 310
Helix 5
AA5
A
95 100Right-handed alpha
Helix 6
AA6
A
101 106Right-handed 310
Helix 7
AA7
A
120 137Right-handed alpha
Helix 8
AA8
A
140 154Right-handed alpha
Helix 9
AA9
A
164 170Right-handed alpha
Helix 10
AB1
A
175 184Right-handed alpha
Helix 11
AB2
A
206 222Right-handed alpha
Helix 12
AB3
A
236 250Right-handed alpha
Helix 13
AB4
A
262 270Right-handed alpha
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There are 3 sheets in PDB entry 6DKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
3 8parallel
Strand 3
A
83 86parallel
Strand 4
A
111 113parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
30 32anti-parallel
Strand 3
A
60 61anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 204first strand
Strand 2
A
187 192anti-parallel
Strand 3
A
156 160anti-parallel
Strand 4
A
273 280anti-parallel
Strand 5
A
227 234anti-parallel
Strand 6
A
255 260parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il