Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DKH entry

There are 4 chains in PDB entry 6DKH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -1	PHE 343
B	ASN -1	PHE 343
C	SER -2	PHE 343
D	SER -2	ARG 291

There are 57 helices in PDB entry 6DKH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	49	Right-handed alpha
Helix 2	AA2	A	96	101	Right-handed alpha
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	133	135	Right-handed 310
Helix 5	AA5	A	145	150	Right-handed alpha
Helix 6	AA6	A	151	165	Right-handed alpha
Helix 7	AA7	A	179	193	Right-handed alpha
Helix 8	AA8	A	203	213	Right-handed alpha
Helix 9	AA9	A	226	231	Right-handed alpha
Helix 10	AB1	A	232	234	Right-handed 310
Helix 11	AB2	A	245	255	Right-handed alpha
Helix 12	AB3	A	275	283	Right-handed alpha
Helix 13	AB4	A	294	305	Right-handed alpha
Helix 14	AB5	A	310	312	Right-handed 310
Helix 15	AB6	A	322	331	Right-handed alpha
Helix 16	AB7	B	40	49	Right-handed alpha
Helix 17	AB8	B	96	101	Right-handed alpha
Helix 18	AB9	B	103	107	Right-handed 310
Helix 19	AC1	B	133	135	Right-handed 310
Helix 20	AC2	B	145	150	Right-handed alpha
Helix 21	AC3	B	151	164	Right-handed alpha
Helix 22	AC4	B	179	192	Right-handed alpha
Helix 23	AC5	B	203	213	Right-handed alpha
Helix 24	AC6	B	220	224	Right-handed 310
Helix 25	AC7	B	226	231	Right-handed alpha
Helix 26	AC8	B	232	234	Right-handed 310
Helix 27	AC9	B	245	255	Right-handed alpha
Helix 28	AD1	B	275	282	Right-handed alpha
Helix 29	AD2	B	294	305	Right-handed alpha
Helix 30	AD3	B	310	312	Right-handed 310
Helix 31	AD4	B	322	331	Right-handed alpha
Helix 32	AD5	C	40	49	Right-handed alpha
Helix 33	AD6	C	96	101	Right-handed alpha
Helix 34	AD7	C	103	107	Right-handed 310
Helix 35	AD8	C	133	135	Right-handed 310
Helix 36	AD9	C	145	150	Right-handed alpha
Helix 37	AE1	C	151	164	Right-handed alpha
Helix 38	AE2	C	179	192	Right-handed alpha
Helix 39	AE3	C	203	213	Right-handed alpha
Helix 40	AE4	C	245	255	Right-handed alpha
Helix 41	AE5	C	275	282	Right-handed alpha
Helix 42	AE6	C	294	305	Right-handed alpha
Helix 43	AE7	C	310	312	Right-handed 310
Helix 44	AE8	C	322	331	Right-handed alpha
Helix 45	AE9	D	40	49	Right-handed alpha
Helix 46	AF1	D	96	101	Right-handed alpha
Helix 47	AF2	D	103	107	Right-handed 310
Helix 48	AF3	D	133	135	Right-handed 310
Helix 49	AF4	D	145	150	Right-handed alpha
Helix 50	AF5	D	151	164	Right-handed alpha
Helix 51	AF6	D	179	192	Right-handed alpha
Helix 52	AF7	D	203	213	Right-handed alpha
Helix 53	AF8	D	245	255	Right-handed alpha
Helix 54	AF9	D	275	283	Right-handed alpha
Helix 55	AG1	D	294	305	Right-handed alpha
Helix 56	AG2	D	310	312	Right-handed 310
Helix 57	AG3	D	322	332	Right-handed alpha

There are 21 sheets in PDB entry 6DKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	25	first strand
Strand 2	A	1	12	anti-parallel
Strand 3	A	61	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	30	39	anti-parallel
Strand 3	A	66	74	anti-parallel
Strand 4	A	84	87	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	30	39	anti-parallel
Strand 3	A	338	342	anti-parallel
Strand 4	A	314	319	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	55	56	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	111	112	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	196	200	parallel
Strand 3	A	172	176	parallel
Strand 4	A	236	241	parallel
Strand 5	A	256	264	parallel
Strand 6	A	285	288	parallel
Strand 7	D	285	288	anti-parallel
Strand 8	D	256	264	parallel
Strand 9	D	236	241	parallel
Strand 10	D	172	176	parallel
Strand 11	D	196	200	parallel
Strand 12	D	217	219	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	24	first strand
Strand 2	B	2	12	anti-parallel
Strand 3	B	61	62	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	30	38	anti-parallel
Strand 3	B	66	74	anti-parallel
Strand 4	B	84	87	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	30	38	anti-parallel
Strand 3	B	338	342	anti-parallel
Strand 4	B	314	319	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	55	56	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	111	112	anti-parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	196	200	parallel
Strand 3	B	172	176	parallel
Strand 4	B	236	241	parallel
Strand 5	B	256	264	parallel
Strand 6	B	285	288	parallel
Strand 7	C	285	288	anti-parallel
Strand 8	C	256	264	parallel
Strand 9	C	236	241	parallel
Strand 10	C	172	176	parallel
Strand 11	C	196	200	parallel
Strand 12	C	217	219	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	25	first strand
Strand 2	C	1	12	anti-parallel
Strand 3	C	61	62	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	30	38	anti-parallel
Strand 3	C	66	74	anti-parallel
Strand 4	C	84	87	anti-parallel
Strand 5	C	137	139	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	30	38	anti-parallel
Strand 3	C	338	342	anti-parallel
Strand 4	C	314	319	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	55	56	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	111	112	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	24	first strand
Strand 2	D	2	12	anti-parallel
Strand 3	D	61	62	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	30	38	anti-parallel
Strand 3	D	66	74	anti-parallel
Strand 4	D	84	87	anti-parallel
Strand 5	D	137	139	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	30	38	anti-parallel
Strand 3	D	338	342	anti-parallel
Strand 4	D	314	319	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	52	first strand
Strand 2	D	55	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DKH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKH