Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DKK entry

There are 2 chains in PDB entry 6DKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 545VAL 857
B
 GLY 545ILE 870
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6DKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
550 556Right-handed alpha
Helix 2
AA2
A
571 577Right-handed alpha
Helix 3
AA3
A
587 595Right-handed alpha
Helix 4
AA4
A
602 620Right-handed alpha
Helix 5
AA5
A
642 645Right-handed 310
Helix 6
AA6
A
687 720Right-handed alpha
Helix 7
AA7
A
720 752Right-handed alpha
Helix 8
AA8
A
755 761Right-handed alpha
Helix 9
AA9
A
765 799Right-handed alpha
Helix 10
AB1
A
799 825Right-handed alpha
Helix 11
AB2
A
833 846Right-handed alpha
Helix 12
AB3
A
852 857Right-handed alpha
Helix 13
AB4
B
550 556Right-handed alpha
Helix 14
AB5
B
571 578Right-handed alpha
Helix 15
AB6
B
587 593Right-handed alpha
Helix 16
AB7
B
602 619Right-handed alpha
Helix 17
AB8
B
642 645Right-handed 310
Helix 18
AB9
B
687 720Right-handed alpha
Helix 19
AC1
B
720 752Right-handed alpha
Helix 20
AC2
B
757 762Right-handed alpha
Helix 21
AC3
B
765 773Right-handed alpha
Helix 22
AC4
B
773 799Right-handed alpha
Helix 23
AC5
B
799 826Right-handed alpha
Helix 24
AC6
B
833 845Right-handed alpha
Helix 25
AC7
B
852 856Right-handed 310
Helix 26
AC8
B
860 869Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6DKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 549first strand
Strand 2
B
647 649anti-parallel
Strand 3
B
627 633anti-parallel
Strand 4
A
662 668parallel
Strand 5
A
654 657anti-parallel
Strand 6
A
622 624anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
581 583parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 549first strand
Strand 2
A
647 649anti-parallel
Strand 3
A
627 633anti-parallel
Strand 4
B
662 668parallel
Strand 5
B
654 657anti-parallel
Strand 6
B
622 624anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 569first strand
Strand 2
B
581 583parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il