Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DKM entry

There are 8 chains in PDB entry 6DKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0THR 76
B
 ASP 78ALA 153
C
 SER 0ARG 75
D
 GLY 76GLU 154
E
 ARG 5THR 76
F
 ASP 80GLN 152
G
 ASP 1THR 76
H
 SER 77GLN 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6DKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 35Right-handed alpha
Helix 2
AA2
A
40 70Right-handed alpha
Helix 3
AA3
B
79 113Right-handed alpha
Helix 4
AA4
B
118 153Right-handed alpha
Helix 5
AA5
C
1 36Right-handed alpha
Helix 6
AA6
C
40 71Right-handed alpha
Helix 7
AA7
D
77 112Right-handed alpha
Helix 8
AA8
D
117 154Right-handed alpha
Helix 9
AA9
E
6 33Right-handed alpha
Helix 10
AB1
E
44 71Right-handed alpha
Helix 11
AB2
F
81 111Right-handed alpha
Helix 12
AB3
F
119 152Right-handed alpha
Helix 13
AB4
G
2 37Right-handed alpha
Helix 14
AB5
G
40 70Right-handed alpha
Helix 15
AB6
G
71 73Right-handed 310
Helix 16
AB7
H
78 113Right-handed alpha
Helix 17
AB8
H
119 152Right-handed alpha
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There are no sheets in PDB entry 6DKM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il