Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DKN entry

There are 2 chains in PDB entry 6DKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 196LEU 533
B
 PHE 197LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6DKN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
206 212Right-handed alpha
Helix 2
AA2
A
247 252Right-handed 310
Helix 3
AA3
A
259 263Right-handed 310
Helix 4
AA4
A
270 284Right-handed alpha
Helix 5
AA5
A
297 306Right-handed alpha
Helix 6
AA6
A
338 355Right-handed alpha
Helix 7
AA7
A
421 428Right-handed alpha
Helix 8
AA8
A
428 440Right-handed alpha
Helix 9
AA9
A
464 474Right-handed alpha
Helix 10
AB1
A
478 497Right-handed alpha
Helix 11
AB2
A
523 533Right-handed alpha
Helix 12
AB3
B
207 212Right-handed alpha
Helix 13
AB4
B
247 252Right-handed 310
Helix 14
AB5
B
259 263Right-handed 310
Helix 15
AB6
B
269 284Right-handed alpha
Helix 16
AB7
B
297 306Right-handed alpha
Helix 17
AB8
B
338 355Right-handed alpha
Helix 18
AB9
B
358 362Right-handed 310
Helix 19
AC1
B
421 428Right-handed alpha
Helix 20
AC2
B
428 440Right-handed alpha
Helix 21
AC3
B
464 474Right-handed alpha
Helix 22
AC4
B
478 495Right-handed alpha
Helix 23
AC5
B
523 533Right-handed alpha
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There are 4 sheets in PDB entry 6DKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 202first strand
Strand 2
A
513 518anti-parallel
Strand 3
A
502 507anti-parallel
Strand 4
A
314 321anti-parallel
Strand 5
A
324 329anti-parallel
Strand 6
A
293 296parallel
Strand 7
A
387 394parallel
Strand 8
A
375 384anti-parallel
Strand 9
A
221 228anti-parallel
Strand 10
A
234 235anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
406 415anti-parallel
Strand 3
A
444 450parallel
Strand 4
A
456 463anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
513 518anti-parallel
Strand 3
B
502 507anti-parallel
Strand 4
B
314 321anti-parallel
Strand 5
B
324 329anti-parallel
Strand 6
B
293 296parallel
Strand 7
B
387 394parallel
Strand 8
B
375 384anti-parallel
Strand 9
B
221 228anti-parallel
Strand 10
B
234 235anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 400first strand
Strand 2
B
406 415anti-parallel
Strand 3
B
444 450parallel
Strand 4
B
456 463anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il