Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DKU entry

There is 1 chain in PDB entry 6DKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 157ILE 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6DKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 172Right-handed alpha
Helix 2
AA2
A
178 191Right-handed alpha
Helix 3
AA3
A
193 210Right-handed alpha
Helix 4
AA4
A
213 225Right-handed alpha
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
A
245 252Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6DKU.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
266 272parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
253 254anti-parallel
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